Reversible lattice-oxygen reactions in batteries

The results open up new ways to explore how to pack more energy into batteries with electrodes made out of low-cost, common materials.

For a wide range of applications, from mobile phones to electric vehicles, the reversibility and cyclability of the chemical reactions occurring inside a rechargeable battery are key to commercial viability. Conventional wisdom had held that involving oxygen in a battery’s electrochemical operation spontaneously triggers irreversible oxygen losses and parasitic surface reactions, reducing reversibility and safety. Recently however, the idea emerged that reactions involving lattice oxygen (i.e., oxygen that’s part of the crystal-lattice structure vs oxygen on the surface) could be useful for improving battery capacity. Here, researchers report the first direct quantification of a strong, beneficial, and highly reversible chemical reaction involving lattice oxygen in electrodes made with low-cost elements.

>Read more on the Advanced Light Source

Image: Advanced spectroscopy at the ALS clearly resolves the activities of cations and anions (known in Chinese as “yin” and “yang” ions) in battery electrodes.

A deep dive into the imperfect world of 2D materials

Berkeley Lab-led team combines several nanoscale techniques to gain new insights on the effects of defects in a well-studied monolayer material

Nothing is perfect, or so the saying goes, and that’s not always a bad thing. In a study at the Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab), scientists learned how nanoscale defects can enhance the properties of an ultrathin, so-called 2D material. They combined a toolbox of techniques to home in on natural, nanoscale defects formed in the manufacture of tiny flakes of a monolayer material known as tungsten disulfide (WS2) and measured their electronic effects in detail not possible before. “Usually we say that defects are bad for a material,” said Christoph Kastl, a postdoctoral researcher at Berkeley Lab’s Molecular Foundry and the lead author of the study, published in the journal ACS Nano. “Here they provide functionality.”

Tungsten disulfide is a well-studied 2D material that, like other 2D materials of its kind, exhibits special properties because of its atomic thinness. It is particularly well-known for its efficiency in absorbing and emitting light, and it is a semiconductor.

>Read more on the Advanced Light Source website

Image: This image shows an illustration of the atomic structure of a 2D material called tungsten disulfide. Tungsten atoms are shown in blue and sulfur atoms are shown in yellow. The background image, taken by an electron microscope at Berkeley Lab’s Molecular Foundry, shows groupings of flakes of the material (dark gray) grown by a process called chemical vapor deposition on a titanium dioxide layer (light gray).
Credit: Katherine Cochrane/Berkeley Lab

How to catch a magnetic monopole in the act

Berkeley Lab-led study could lead to smaller memory devices, microelectronics, and spintronics

A research team led by the Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) has created a nanoscale “playground” on a chip that simulates the formation of exotic magnetic particles called monopoles. The study – published recently in Science Advances – could unlock the secrets to ever-smaller, more powerful memory devices, microelectronics, and next-generation hard drives that employ the power of magnetic spin to store data.

Follow the ‘ice rules’
For years, other researchers have been trying to create a real-world model of a magnetic monopole – a theoretical magnetic, subatomic particle that has a single north or south pole. These elusive particles can be simulated and observed by manufacturing artificial spin ice materials – large arrays of nanomagnets that have structures analogous to water ice – wherein the arrangement of atoms isn’t perfectly symmetrical, leading to residual north or south poles.

>Read more on the Advanced Light Source at Berkeley Lab website

Image: Full image here. This  nanoscale “playground” on a chip uses nanomagnets to simulate the formation of exotic magnetic particles called “monopoles.” Credit: Farhan/Berkeley Lab

Meteorites suggest galvanic origins for martian organic carbon

The nature of carbon on Mars has been the subject of intense research since NASA’s Viking-era missions in the 1970s, due to the link between organic (carbon-containing) molecules and the detection of extraterrestrial life. Analyses of Martian meteorites marked the first confirmation that macromolecular carbon (MMC)—large chains of carbon and hydrogen—are a common occurrence in Mars rocks. More recently, researchers have applied the lessons taken from studies of meteorites to the data being gathered by the Curiosity rover, finding similar MMC signatures on Mars itself. Now, the central question is “what is the synthesis mechanism of this abiotic organic carbon?”

>Read more about on the Advanced Light Source website

Image: A high-resolution transmission electron micrograph (scale bar = 50 nm) of a grain from a Martian meteorite. Reminiscent of a long dinner fork, organic carbon layers were found between the intact “tines.” This texture was created when the volcanic minerals of the Martian rock interacted with a salty brine and became the anode and cathode of a naturally occurring battery in a corrosion reaction. This reaction would then have enough energy—under certain conditions—to synthesize organic carbon.
Credit: Andrew Steele

Spin-momentum locking in cuprate high-temperature superconductors

The results open a new chapter in the mystery of high-temperature superconductors, suggesting that new, unexplored interactions and mechanisms might be at play.

In the world of superconductors, “high temperature” means that the material can conduct electricity without resistance at temperatures higher than expected, but still far below room temperature. Within this special class of high-temperature superconductors (HTSCs), cuprates—consisting of superconducting CuO2 layers separated by spacer layers—are some of the best performers, generating interest in these materials for potential use in super-efficient electrical wires that can carry power without any loss of electron momentum.

A new spin on cuprate HTSCs

Two kinds of electron interactions have been known to give rise to novel properties in new materials, including superconductors. Scientists who study cuprate superconductors have focused on just one of those interactions: electron correlation—electrons interacting with each other. The other kind of electron interaction found in exotic materials is spin-orbit coupling—the way in which an electron’s magnetic moment interacts with atoms in the material.

>Read more on the Advanced Light Source website

Image: Chris Jozwiak, Alessandra Lanzara, Kenneth Gotlieb, and Chiu-Yun Lin.
Credit: Peter DaSilva/Berkeley Lab

Project Director Dave Robin announces ALS-U project beamlines

Over the past year, a process involving ALS and ALS-U staff, the ALS user community, and external advisory committees has been ongoing to select the insertion-device beamlines that will be built and upgraded within the scope of the ALS-U Project. These beamlines will join existing ALS beamlines to form the full complement of capabilities that will be available at the upgraded ALS in several years. I am delighted to inform you that the selection process is now complete and to announce the result.

The ALS-U Project will build two new beamlines

  • a soft x-ray beamline in Sector 10, dubbed “FLEXON,” whose high-brightness coherent flux and multiple complementary techniques will probe the roles of multiscale heterogeneity in quantum materials; and
  • a tender x-ray beamline in Sector 8, whose coherent scattering and scanning spectromicroscopy capabilities will address challenges at the frontiers of diverse scientific areas, ranging from soft condensed matter and biomaterials to energy science and Earth and environmental sciences.

>Read more on the Advanced Light Source website

Image: ALS-U Project Director Dave Robin.

Award for a pioneer in synchrotron techniques and tools

Zahid Hussain is honored with the Secretary’s Distinguished Service Award during a surprise ceremony.

Zahid Hussain, a longtime scientist at the Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab), has always been more focused on achievements than accolades, though his lists run long in both categories.

His fingerprints are on many of the instruments and scientific milestones at Berkeley Lab’s Advanced Light Source (ALS), which produces many types of light, from infrared to X-rays, for a range of experiments carried out by visiting scientists from around the world. He has pioneered soft X-ray techniques and instrumentation at the ALS that have been widely adopted by the global scientific community.

>Read more on the Advanced Light Source (ALS) at Berkeley Lab

A two-pronged defense against bacterial self-intoxication

Researchers solved the structure of a bacterial toxin bound to a neutralizing protein, revealing two distinct mechanisms for how the toxin-producing bacteria avoid poisoning themselves.

Microbial communities are of fundamental importance to virtually all natural ecosystems, from the ocean floor to the gastrointestinal tract. Although the term “communities” implies cooperation, scientists now realize that bacterial colonies compete with each other for life-sustaining resources, availing themselves of a variety of strategies to reduce overcrowding. In some cases, they secrete toxins in their fight for survival. Here, researchers studied one such toxin from the bacterium Serratia proteamaculans, various strains of which live inside tree roots or inhabit the digestive tracts of insects and other animals.

Toxin targets cell division

The researchers showed that the toxin, Tre1, targets a bacterial protein, FtsZ, which is analogous to tubulin in human cells. Tubulin molecules are the building blocks of microtubules—long polymers that provide structure and shape to our cells and play an important role in cell division. In bacteria, FtsZ loses the ability to polymerize when attacked by the Tre1 toxin. Instead of dividing, the intoxicated cells grow longer and longer until they eventually split open and die (cellular elongation and lysis).

>Read more on the Advanced Light Source website

Image: Healthy bacteria (left) and bacteria (right) whose cell-division machinery has been disrupted by a toxin newly discovered in some bacterial arsenals.
Credit: Mougous Lab

Topological matters: toward a new kind of transistor

X-ray experiments at Berkeley Lab provide first demonstration of room temperature switching in ultrathin material that could serve as a ‘topological transistor’

Billions of tiny transistors supply the processing power in modern smartphones, controlling the flow of electrons with rapid on-and-off switching. But continual progress in packing more transistors into smaller devices is pushing toward the physical limits of conventional materials. Common inefficiencies in transistor materials cause energy loss that results in heat buildup and shorter battery life, so researchers are in hot pursuit of alternative materials that allow devices to operate more efficiently at lower power.
Now, an experiment conducted at the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) has demonstrated, for the first time, electronic switching in an exotic, ultrathin material that can carry a charge with nearly zero loss at room temperature. Researchers demonstrated this switching when subjecting the material to a low-current electric field.

>Read more on Advanced Light Source (ALS) at LBNL website

Image: James Collins, a researcher at Monash University in Australia, works on an experiment at Beamline 10.0.1, part of Berkeley Lab’s Advanced Light Source.
Credit: Marilyn Chung/Berkeley Lab

Toward a blueprint for anti-influenza drugs

The structures provide an atomic-level blueprint from which to design more effective anti-influenza drugs that can overcome growing drug resistance.

Influenza virus infection is a perennial problem. According to the Centers for Disease Control and Prevention, the 2017-18 flu season saw high levels of emergency-department visits for influenza-like illness, high influenza-related hospitalization rates, and elevated and geographically widespread influenza activity for an extended period.

Although yearly vaccinations can reduce the number of flu infections, these vaccines are able to target only a subset of viral strains—there is, as yet, no “universal vaccine.” As a result, there is still a need for antiviral drugs to treat the illness after infection has occurred. This is especially important for groups of people who can experience serious complications from the flu, such as those with respiratory diseases or immune disorders. In recent years, however, resistance to certain classes of antiviral drugs has become a problem.

>Read more on the Advanced Light Source website

Image: Molecular dynamics simulation of a drug molecule, amantadine (cyan sticks), in the M2 proton channel. The drug’s ammonium group (blue tip) mimics hydronium, stabilizing the drug molecule in a position to block the channel.

Tunable ferromagnetism in a 2D material at room temperature

Breakthroughs in next-generation spintronic logic and memory devices could hinge on our ability to control spin behavior in two-dimensional materials—stacks of ultrathin layers held together by relatively weak electrostatic (van der Waals) forces. The reduced dimensionality of these so-called “van der Waals materials” often leads to tunable electronic and magnetic properties, including intrinsic ferromagnetism. However, it remains a challenge to tune this ferromagnetism (e.g. spin orientation, magnetic domain phase, and magnetic long-range order) at ambient temperatures.

In this work, researchers performed a study of Fe3GeTe2, a van der Waals material that consists of Fe3Ge layers alternating with two Te layers. The material’s magnetic properties were characterized using a variety of techniques, including x-ray absorption spectroscopy (XAS) with x-ray magnetic circular dichroism (XMCD) contrast at Beamline 6.3.1 and photoemission electron microscopy (PEEM) at Beamline 11.0.1.

>Read more on the Advanced Light Source (ALS) at LBNL website

Image: PEEM images for unpatterned and patterned Fe3GeTe2 samples at 110 K and 300 K. The unpatterned samples formed stripe domains at 110 K, which disappeared at 300 K. The patterned samples formed out-of-plane stripe domains at 110 K and transitioned to in-plane vortex states at 300 K, demonstrating control over magnetism at room temperature and beyond.

Researchers create most complete high-res atomic movie of photosynthesis to date

In a major step forward, SLAC’s X-ray laser captures all four stable states of the process that produces the oxygen we breathe, as well as fleeting steps in between. The work opens doors to understanding the past and creating a greener future.

Despite its role in shaping life as we know it, many aspects of photosynthesis remain a mystery. An international collaboration between scientists at SLAC National Accelerator Laboratory, Lawrence Berkeley National Laboratory and several other institutions is working to change that. The researchers used SLAC’s Linac Coherent Light Source (LCLS) X-ray laser to capture the most complete and highest-resolution picture to date of Photosystem II, a key protein complex in plants, algae and cyanobacteria responsible for splitting water and producing the oxygen we breathe. The results were published in Nature today.

Explosion of life

When Earth formed about 4.5 billion years ago, the planet’s landscape was almost nothing like what it is today. Junko Yano, one of the authors of the study and a senior scientist at Berkeley Lab, describes it as “hellish.” Meteors sizzled through a carbon dioxide-rich atmosphere and volcanoes flooded the surface with magmatic seas.
Over the next 2.5 billion years, water vapor accumulating in the air started to rain down and form oceans where the very first life appeared in the form of single-celled organisms. But it wasn’t until one of those specks of life mutated and developed the ability to harness light from the sun and turn it into energy, releasing oxygen molecules from water in the process, that Earth started to evolve into the planet it is today. This process, oxygenic photosynthesis, is considered one of nature’s crown jewels and has remained relatively unchanged in the more than 2 billion years since it emerged.

>Read more on the SLAC website (for LCLS)
>Read also the article on the Berkeley website (for ALS)

Image: Using SLAC’s X-ray laser, researchers have captured the most complete high-res atomic movie to date of Photosystem II, a key protein complex in plants, algae and cyanobacteria responsible for splitting water and producing the oxygen we breathe.
Credit: Gregory Stewart, SLAC National Accelerator Laboratory)

Expanding the infrared nanospectroscopy window

The ability to investigate heterogeneous materials at nanometer scales and far-infrared energies will benefit a wide range of fields, from condensed matter physics to biology.

Scientific studies require tools that match the natural length and energy scales of the phenomena under investigation. For many questions in biology, quantum materials, and electronics, this means nanometer spatial resolution combined with far-infrared energies. For example, scientists might want to study collective electron oscillations in quantum materials for optoelectronic circuits, or the characteristic vibration modes of protein molecules in biological systems.

A recently developed infrared technique—synchrotron infrared nanospectroscopy (SINS)—combines broadband synchrotron light with atomic-force microscopes to enable infrared imaging and spectroscopy at the nanoscale. However, the technique could only be used in a narrow range of the electromagnetic spectrum that excluded far-infrared wavelengths, due to a scarcity of suitable light sources and detectors for that range. In this work, researchers extended SINS to far-infrared wavelengths, opening up a whole new experimental regime.

> Read more on the Advanced Lightsource at Berkeley Lab website

Image: Left: Nanoscale images of SiO2 hole array, obtained using atomic-force microscopy (AFM, top) and synchrotron infrared nanospectroscopy (SINS, bottom), demonstrating SINS contrast between patterned SiO2 and underlying Si substrate with ~30 nm spatial resolution (inset). Scale bar = 200 nm. Right: SINS broadband spectroscopic data for SiO2, taken along dotted line in images at left, showing amplitude (top) and phase (bottom) information from asymmetric  Si–O stretching (1200 cm–1) and bending (460 cm–1) modes. The lower-energy bending mode had previously been inaccessible with this technique.

Targeting bacteria that cause meningitis and sepsis

The work provides molecular-level information about how the antibody confers broad immunity against a variable target and suggests strategies for further improvement of available vaccines.

Our central nervous systems (brain and spinal cord) are surrounded by three membranes called “meninges.” Meningitis is caused by the swelling of these membranes, resulting in headache, fever, and neck stiffness. Most cases of meningitis in the United States are the result of viral infections and are relatively mild. However, meningitis caused by bacterial infection, if left untreated, can be deadly or lead to serious complications, including hearing loss and neurologic damage.

The bacterium responsible for meningitis (Neisseria meningitidis) can also infect the bloodstream, causing another life-threatening condition known as sepsis. N. meningitidis is spread through close contact (coughing or kissing) or lengthy contact (e.g. in dorm rooms or military barracks). In this work, researchers were interested in understanding how humans develop immunity to bacterial meningitis and sepsis, collectively known as meningococcal disease, by vaccination with a new protein-based vaccine.

>Read more on the Advanced Light Source website

Image: The work provides molecular-level information about how the antibody confers broad immunity against a variable target and suggests strategies for further improvement of available vaccines.

2018 ALS User Meeting Highlights

Past, present, and future converged at the ALS User Meeting, held October 2–4, 2018. About 480 registrants helped celebrate the 25th anniversary of first light at the ALS and the announcement of CD-1 approval for the ALS Upgrade project (ALS-U), a major federal milestone. Users’ Executive Committee (UEC) Chair Will Chueh kicked things off by acknowledging the organizers—UEC members Jennifer Ciezak-Jenkins, Alex Frañó, and Michael Jacobs—and thanking the ALS for its support. He also explained the organizing principle behind the program: to engage student and young-scientist users and strengthen interactions between users in general. Jeff Neaton, Berkeley Lab’s Associate Laboratory Director for Energy Sciences, then extended an official welcome to attendees. He noted that it’s been an exciting year for the ALS, which gained a new director, Steve Kevan, in addition to CD-1 approval for ALS-U.

>Read more on the Advanced Light Source website

Image: Plenary session, Day 1.
Credit: Peter DaSilva/Berkeley Lab

New clues to cut through the mystery of Titan’s atmospheric haze

A team including Berkeley Lab scientists homes in on a ‘missing link’ in Titan’s one-of-a-kind chemistry.

Saturn’s largest moon, Titan, is unique among all moons in our solar system for its dense and nitrogen-rich atmosphere that also contains hydrocarbons and other compounds, and the story behind the formation of this rich chemical mix has been the source of some scientific debate.
Now, a research collaboration involving scientists in the Chemical Sciences Division at the Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) has zeroed in on a low-temperature chemical mechanism that may have driven the formation of multiple-ringed molecules – the precursors to more complex chemistry now found in the moon’s brown-orange haze layer.
The study, co-led by Ralf Kaiser at the University of Hawaii at Manoa and published in the Oct. 8 edition of the journal Nature Astronomy, runs counter to theories that high-temperature reaction mechanisms are required to produce the chemical makeup that satellite missions have observed in Titan’s atmosphere.

>Read more on the Advanced Light Source/Berkeley Lab website

Image: The atmospheric haze of Titan, Saturn’s largest moon (pictured here along Saturn’s midsection), is captured in this natural-color image (box at left). A study that involved experiments at Berkeley Lab’s Advanced Light Source has provided new clues about the chemical steps that may have produced this haze.
Credits: NASA Jet Propulsion Laboratory, Space Science Institute, Caltech