Advanced imaging technique used to study triggers of tree mortality

Researchers are using advanced imaging technologies similar to those used in hospitals, including micro-computed tomography on the Imaging and Medical beamline (IMBL) at the Australian Synchrotron, to determine how vulnerable our trees are to drought and heatwaves.
A new scientific review published In Nature outlines progress towards understanding the likely risks from droughts and heatwaves that combine to kill millions of trees around the world with spectacular effects on the environment.

Recent drought and heatwave conditions in northern Australia have killed more than 7000ha of mangrove forests, leaving these essential ecosystems stark, grey skeletons of trees. In California, the prolonged drought period has killed more than 100 million trees that increase the intensity of wildfires and impact on the region’s beauty, tourism and environmental health.
Dead trees, of course, cannot store carbon out of the air and the enormous numbers of dead trees release large quantities of stored carbon back into the air as they are burned or decay, further amplifying the effects of rising carbon dioxide.

>Read more on the Australian Synchrotron website

Image: IMBL robot positions the tree for imaging.

A surprising twist on skyrmions

Magnetic tomography has been used to reconstruct a tornado-like 3D magnetic skyrmion structure.

Vortex structures are common in nature, reaching from swirls in our morning coffee to spiral galaxies in the universe. Vortices are been best known from fluid dynamics. Take the example of a tornado. Air circulates around an axis, forming a swirl, and once formed, the twisted air parcels can move, deform, and interact with their environment without disintegrating. A skyrmion is the magnetic version of a tornado which is obtained by replacing the air parcels that make up the tornado by magnetic spins, and by scaling the system down to the nanometre scale. Once formed, the ensemble of twisted spins can also move, deform, and interact with their environment without breaking up ‒ the ideal property for information carriers for memory and logic devices.

What makes a tornado stable is not only coming from its twist, but also due to its three-dimensional properties, i.e., the wind current has extra twist along the column of turbulent flow. This leads to a tight bundling of the vortex sheets at different heights along the tornado column. Similarly, such a 3D structure can also occur in magnetic skyrmions, guaranteeing their topological stability. Up to now, skyrmions have been most commonly treated as two-dimensional objects, and their exciting tornado-like structure remained unexplored. In fact, the 3D characterization of magnetic structures is a rather challenging task. A team of researchers, led by the University of Oxford and Diamond Light Source, have used the energy-dependence of resonant elastic X-ray scattering (REXS) on beamline I10 at Diamond to measure the microscopic depth dependence of ‘skyrmion tornados’ in Cu2OSeO3. In their work, published in Proceedings of the National Academy of Sciences, they reveal a continuous change from Néel-type winding at the surface to Bloch-type winding in the bulk with increasing depth. This not only demonstrates the power of REXS for microscopic studies of surface-induced reconstructions of magnetic order, but also reveals the hidden energetics that makes magnetic skyrmions such a stable state – a crucial finding for skyrmion device engineering.

>Read more on the Diamond Light Source website

Figure: Illustration of a ‘Skyrmion tornado’. The skyrmion order changes from Néel-type at the surface to Bloch-type deeper in the sample. On the right hand side, the corresponding stereographic projections of these two boundary skyrmion patterns are shown.

Synchrotron X-rays reveal identity of 1.5 million-year-old Tuscan big cat

The identity of a mysterious fossil felid found in central Italy has been revealed thanks to synchrotron techniques.

Scientists used X-ray tomography to virtually extract the fossil from its rock encasing and describe decisive anatomical details for the first time. Previously thought to be an extinct Eurasian jaguar, this new study concluded by identifying the felid as Acinonyx pardinensis, one of the most intriguing extinct carnivores of the Old World Plio-Pleistocene. The study is published in Scientific Reports.

The team of physicists and palaeontologists from the University of Perugia, the University of Verona and the University of Rome Sapienza, in collaboration with the European Synchrotron, ESRF, scanned the partial skull of the specimen, still embedded in the rock. The analysis of images and 3D models obtained revealed a mosaic of cheetah-like teeth and Panthera-like features leading to a reconsideration of the ecological role of this species.

>Read more on the European Synchrotron website

Image: Dawid Iurino with the Acinonyx pardinensis skull from Monte Argentario, on the set-up of ESRF ID17 beamline.
Credit: Marco Cherin

New high-precision instrument enables rapid measurements of protein crystals

A team of scientists and engineers at the U.S. Department of Energy’s (DOE) Brookhaven National Laboratory have developed a new scientific instrument that enables ultra-precise and high-speed characterization of protein crystals at the National Synchrotron Light Source II (NSLS-II)—a DOE Office of Science User Facility at Brookhaven, which generates high energy x-rays that can be harnessed to probe the protein crystals. Called the FastForward MX goniometer, this advanced instrument will significantly increase the efficiency of protein crystallography by reducing the run time of experiments from hours to minutes.

Protein crystallography is an essential research technique that uses x-ray diffraction for uncovering the 3D structures of proteins and other complex biological molecules, and understanding their function within our cells. Using this knowledge about the basic structure of life, scientists can advance drug design, improve medical treatments, and unravel other environmental and biochemical processes governing our everyday lives.

>Read more on the NSLS-II website

Image: Yuan Gao, Wuxian Shi, Evgeny Nazaretski, Stuart Myers, Weihe Xu and, Martin Fuchs designed and implemented the new goniometer scanner system for ultra-fast and efficient serial protein crystallography at the Frontier Microfocusing Macromolecular Crystallography (FMX) beamline at the National Synchrotron Light Source II.

Taking additive manufacturing’s heart beat

Additive manufacturing, or 3D printing, builds objects by adding layers and it is emerging as a more flexible and reliable way of manufacturing complex structures in the aerospace, engineering and biomedical industries. A British team is at the ESRF’s ID19 to see into the heart of the process and understand it.

“I would not want to ship this equipment on an aeroplane”, Chu Lun Alex Leung said, scientist from the University of Manchester. “It was too precious to leave it in the hands of third parties”, he added. Instead of coming to the ESRF by aeroplane, Leung and his colleagues endured the 12-hour drive in a rental van all the way from Oxfordshire (UK) to the ESRF to make sure their unique equipment arrived safely.

Leung was referring to the laser additive manufacturing (LAM) process replicator, or LAMPR for short, a machine himself and colleagues at the Research Complex at Harwell have developed that 3D prints polymers, metals and ceramics while ESRF’s X-rays probe the heart of the process – the melting and solidification of powders to form complex 3D printed components.

>Read more on the European Synchrotron website

Image: The team on the beamline, next to the laser additive manufacturing (LAM) process replicator. Front row: Margie P. Olbinado, Yunhui Chen. Back row: Sam Tammas-Williams, Lorna Sinclair, Peter D. Lee, Chu lun alex Leung, Samuel Clark, Sebastian Marussi.
Credit: C.Argoud

A new Polarisation Analyser, and the benefits of 3D printing

The I16 beamline at Diamond is dedicated to the study of advanced materials using X-ray diffraction; part of this process is to use a device, known as a polarisation analyser (PA) that can analyse magnetic scattering from samples. Magnetic scattering is different to, and weaker than, normal X-ray scattering and analysis of the polarisation of this scattering can be used to gain insights into the magnetic properties of materials. Researchers can use this information to determine details of the 3D structure of the sample material.

The design of the PA includes an assembly of vacuum chambers, sets of slits to remove unwanted scattering and various detectors, arranged to rotate about different axes. Researchers use data collected from the detectors as they are moved and rotated to build up information on the polarisation of the scattering.

>Read more on the Diamond Light Source website

Image: extract of the polarisation analyser; to watch the video “The motion of the main axes of the polarisation analyser”, please have a look here.

 

Shedding new light on laser additive manufacturing

Additive manufacturing (AM, also known as 3D printing) allows us to create incredibly complex shapes, which would not be possible using traditional manufacturing techniques. However, objects created using AM have different properties from traditional manufacturing routes, which is sometimes a disadvantage.

Laser additive manufacturing (LAM) uses a laser to fuse together metallic, ceramic or other powders into complex 3D shapes, layer by layer. The cooling rates are extremely rapid, and since they are unlike conventional processes we don’t know the optimal conditions to obtain the best properties, delaying the uptake of LAM in the production of safety-critical engineering structures, such as turbine blades, energy storage and biomedical devices. We need a method to see inside the process of LAM to better understand and optimise the laser-matter interaction and powder consolidation mechanisms.

Based in the Research Complex at Harwell, a team of researchers have worked with scientists at I12, the Joint Engineering Environment Processing (JEEP) beamline and the Central Laser Facility to build a laser additive manufacturing machine which operates on a beamline, allowing you to see into the heart of the process, revealing the underlying physical phenomena during LAM.

>Read more on the Diamond Light Source website

Picture: The Additive Manufacturing Team from the Research Complex at Harwell on the Joint Engineering Environment Processing (JEEP, I12) beamline. The Laser Additive Manufacturing Process Replicator (or LAMPR) on the right is used to reveal the underlying physical phenomena during LAM.

The early bird got to fly: Archaeopteryx was an active flyer

Was Archaeopteryx capable of flying, and if so, how?

The question of whether the Late Jurassic dino-bird Archaeopteryx was an elaborately feathered ground dweller, a glider, or an active flyer has fascinated palaeontologists for decades. Valuable new information obtained with state-of-the-art synchrotron microtomography at the ESRF, the European Synchrotron (Grenoble, France), allowed an international team of scientists to answer this question in Nature Communications. The wing bones of Archaeopteryx were shaped for incidental active flight, but not for the advanced style of flying mastered by today’s birds.

Was Archaeopteryx capable of flying, and if so, how? Although it is common knowledge that modern-day birds descended from extinct dinosaurs, many questions on their early evolution and the development of avian flight remain unanswered. Traditional research methods have thus far been unable to answer the question whether Archaeopteryx flew or not. Using synchrotron microtomography at the ESRF’s beamline ID19 to probe inside Archaeopteryx fossils, an international team of scientists from the ESRF, Palacký University, Czech Republic, CNRS and Sorbonne University, France, Uppsala University, Sweden, and Bürgermeister-Müller-Museum Solnhofen, Germany, shed new light on this earliest of birds.

>Read more on the European Synchrotron website

Image: The Munich specimen of the transitional bird Archaeopteryx. It preserves a partial skull (top left), shoulder girdle and both wings slightly raised up (most left to center left), the ribcage (center), and the pelvic girdle and both legs in a “cycling” posture (right); all connected by the vertebral column from the neck (top left, under the skull) to the tip of the tail (most right). Imprints of its wing feathers are visible radiating from below the shoulder and vague imprints of the tail plumage can be recognised extending from the tip of the tail.
Credits: ESRF/Pascal Goetgheluck

Examining the crystallisation during additive biomanufacturing

A research group from the University of Manchester has used wide-angle X-ray diffraction (XRD) in one of the first studies to investigate the evolution of crystallinity and crystal orientation in polycaprolactone (PCL) during 3D printing.

The team has developed a new extrusion-based printing machine, the Plasma-assisted Bioextrusion System (PABS). Extrusion-based techniques are widely used due to their versatility and simplicity, and their ability to print a range of materials in a cell-friendly environment, with high precision. PABS uses a novel approach for biomanufacturing and tissue engineering, combining screw-assisted extrusion, pressure-assisted extrusion and plasma jetting.

>Read more on the Diamond Light Source website

Figure: Conceptual material transition from extrusion-based filament printing to the partial replacement of a knee joint via 3D scaffolding.
Credit: Fengyuan Liu, Wajira Mirihanage, Paulo Bartolo, Medical Engineering Research Centre, the University of Manchester

Research on the teeth of a prehistoric fetus

It gives us information about the last months of a mother and child, who lived 27.000 years BP.

Fossil records enable a detailed reconstruction of our planet’s history and of the evolution of our species. Dental enamel is a sort of biological archive that constantly tracks periods of good and bad health, while forming. Prenatal enamel, which grows during intrauterine life, reports the mother’s history as well.

We have studied fossil records found in the “Ostuni 1” burial site, discovered in Santa Maria di Agnano in Puglia in 1991 by Donato Coppola (Università di Bari, Italy) and dated back over 27,000 years. More specifically, we were interested in the teeth of a fetus found in the pelvic area of the skeleton of a young girl. By analysing the still forming teeth of the baby, it has been possible to obtain information about the health condition of the mother during the last months of pregnancy, to establish the gestational age of the fetus, and also to identify some specificities of the embryonal development. For the first time, it has been possible to reconstruct life and death of an ancient fetus and, at the same time, to shed light on its mother’s health.

Three still-forming incisors, belonging to the fetus, have been visualized and analyzed by means of X-ray microtomography at Elettra. The preliminary analysis on a portion of the fetal mandible, realized at the TomoLab laboratory allowed us to study the still-forming incisor contained within it (see Fig. 1). Thanks to the unique properties of synchrotron radiation and using a specifically-developed methodology, a high resolution 3D analysis has been carried out on the teeth at the SYRMEP beamline. This approach, allowed us to carry out a virtual histological analysis of the precious fossil teeth, revealing the finest structures of the dental enamel in a non-destructive way.

>Read more on the Elettra website

Image:  Pseudo color rendering of the virtual histological section of the Ostuni1b’s upper left deciduous central incisor. The corresponding CT scan has been acquired at the SYRMEP beamline in phase-contras mode.

A first look at how miniscule bubbles affect the texture of noodles

The texture of a noodle is a remarkably complicated thing. When you bite into a spoonful of ramen noodles, you expect a bit of springiness (or a resistance to your bite) on the outside and a pleasantly soft give on the interior. These variations are so tiny as to be often overlooked, but they matter to noodle quality.

There are many factors in play in making a good noodle. For a wheat noodle, the structure of the gluten affects the overall quality. How a noodle dough is stretched, folded, and rolled out matters. And in between all of this, there are miniscule air bubbles that are part of the mix and influence texture.

Until recently, no one had ever looked at the bubbles in noodle dough.

“There was absolutely nothing in the literature indicating that the bubbles were there or that they were important at all. We did have some indirect evidence for bubbles from our ultrasonic experiments, but CLS (Canadian Light Source) microtomography was in some ways a hail Mary experiment: OK, let’s just sheet some dough and see what we find,” said Martin Scanlon, U of M professor in the Faculty of Agriculture and Food Sciences, and the project’s lead researcher.

>Read more on the Canadian Light Source website

 

SLAC scientists investigate how metal 3D printing can avoid producing flawed parts

The goal of these X-ray studies is to find ways to improve manufacturing of specialized metal parts for the aerospace, aircraft, automotive and healthcare industries.

Scientists at the Department of Energy’s SLAC National Accelerator Laboratory are using X-ray light to observe and understand how the process of making metal parts using three-dimensional (3-D) printing can leave flaws in the finished product – and discover how those flaws can be prevented. The studies aim to help manufacturers build more reliable parts on the spot – whether in a factory, on a ship or plane, or even remotely in space – and do it more efficiently, without needing to store thousands of extra parts.

The work is taking place at the lab’s Stanford Synchrotron Radiation Lightsource (SSRL) in collaboration with scientists from the DOE’s Lawrence Livermore National Laboratory and Ames Laboratory.

The 3-D printing process, also known as additive manufacturing, builds solid, three-dimensional objects from a computer model by adding material layer by layer. The use of plastics and polymers in 3-D printing has advanced rapidly, but 3-D printing with metals for industrial purposes has been more challenging to sort out.

>Read more on the SSRL website

Picture: SLAC staff scientist Johanna Nelson Weker, front, leads a study on metal 3-D printing at SLAC’s Stanford Synchrotron Radiation Lightsource with researchers Andrew Kiss and Nick Calta, back.
Credit: Dawn Harmer/SLAC

 

How metal 3-D printing can avoid producing flawed parts

The goal of these X-ray studies is to find ways to improve manufacturing of specialized metal parts for the aerospace, aircraft, automotive and healthcare industries.

Scientists at the Department of Energy’s SLAC National Accelerator Laboratory are using X-ray light to observe and understand how the process of making metal parts using three-dimensional (3-D) printing can leave flaws in the finished product – and discover how those flaws can be prevented. The studies aim to help manufacturers build more reliable parts on the spot – whether in a factory, on a ship or plane, or even remotely in space – and do it more efficiently, without needing to store thousands of extra parts.

The work is taking place at the lab’s Stanford Synchrotron Radiation Lightsource (SSRL) in collaboration with scientists from the DOE’s Lawrence Livermore National Laboratory and Ames Laboratory.

The 3-D printing process, also known as additive manufacturing, builds solid, three-dimensional objects from a computer model by adding material layer by layer. The use of plastics and polymers in 3-D printing has advanced rapidly, but 3-D printing with metals for industrial purposes has been more challenging to sort out.

“With 3-D printing, you can make parts with very complex geometries that are not accessible for casting like regular metal parts,” says SLAC staff scientist Johanna Nelson Weker, who is leading the project. “Theoretically, it can be a quick turnaround – simply design, send, print from a remote location. But we’re not there yet. We still need to figure out all of the parameters involved in making solid, strong parts.”

>Read more on the Stanford Synchrotron Radiation Lightsource website

Image: SLAC staff scientist Johanna Nelson Weker, front, leads a study on metal 3-D printing at SLAC’s Stanford Synchrotron Radiation Lightsource with researchers Andrew Kiss and Nick Calta, back.
Credit: Dawn Harmer/SLAC

Natalie Larson awarded

She received the Neville B. Smith Student Poster Prize

Natalie Larson, a current ALS doctoral fellow from UC Santa Barbara, won the first prize Neville B. Smith Student Poster Award at the 2017 ALS User Meeting. Larson’s winning poster—”In-situ x-ray computed tomography of defect evolution during polymer impregnation and pyrolysis processing of ceramic matrix composites”—featured the first two big in situ experiments she performed at Beamline 8.3.2.

Larson has been an ALS user since 2014 and became a doctoral fellow in 2016. She’ll continue at the ALS for about another year through a National Science Foundation fellowship that will see her through the end of her PhD. The primary focus of her work is developing high-temperature ceramic matrix composites (CMCs) for more efficient jet engines. Larson works with Beamline Scientists Dula Parkinson and Alastair MacDowell and Project Scientist Harold Barnard on developing experiments for in situ x-ray computed tomography experiments to observe 3D real-time defect formation in CMCs.

 

3D structure of a molecular scaffold with role in cancer

The research team is looking at ways of targeting parts of the scaffold molecule critical for its function

Melbourne researchers have used the Australian Synchrotron to produce the first three-dimensional structure of a molecular scaffold, known to play a critical role in the development and spread of aggressive breast, colon and pancreatic cancer.
Armed with the structure, the research team is looking at ways of targeting parts of the scaffold molecule critical for its function. They hope the research will lead to novel strategies to target cancer.

The research was the result of a long-standing collaboration between Walter and Eliza Hall Institute (WEHI) researchers Dr Onisha Patel and Dr Isabelle Lucet and Monash University Biomedical Research Institute researcher Professor Roger Daly.

Dr Santosh Panjikar, a macromolecular crystallographer at the Australian Synchrotron and Dr Michael Griffin from Bio21 Institute at the University of Melbourne made important contributions to the study, which was published in the journal Nature Communications.

Translation of ‘Hidden’ Information Reveals Chemistry in Action

New method allows on-the-fly analysis of how catalysts change during reactions, providing crucial information for improving performance.

Chemistry is a complex dance of atoms. Subtle shifts in position and shuffles of electrons break and remake chemical bonds as participants change partners. Catalysts are like molecular matchmakers that make it easier for sometimes-reluctant partners to interact.

Now scientists have a way to capture the details of chemistry choreography as it happens. The method—which relies on computers that have learned to recognize hidden signs of the steps—should help them improve the performance of catalysts to drive reactions toward desired products faster.

The method—developed by an interdisciplinary team of chemists, computational scientists, and physicists at the U.S. Department of Energy’s Brookhaven National Laboratory and Stony Brook University—is described in a new paper published in the Journal of Physical Chemistry Letters. The paper demonstrates how the team used neural networks and machine learning to teach computers to decode previously inaccessible information from x-ray data, and then used that data to decipher 3D nanoscale structures.