The role of lichens in the evolutionary process of life on Earth

Measurements carried out in several beamlines of Sirius provided strong evidence for the classification of the fossil Spongiophyton nanum as a lichen, suggesting a strong contribution of these organisms to the process of evolution of life in terrestrial environments.

A broad international effort involving several research institutions brought together experts from Brazil, Australia, the United States, the United Kingdom and France to unravel a great enigma in the history of the evolution of life on Earth. The research, which was featured on the cover of the journal Science Advances, demonstrated that the organism Spongiophyton nanum was, in fact, one of the oldest and most widely distributed lichens in Earth’s history. 

The researchers used multiple beamlines from Sirius — CNPEM’s synchrotron light source — during the investigations, employing advanced imaging and characterization techniques using synchrotron light, making it possible to reveal microstructures and chemical signatures preserved in fossils with very high resolution. The work also included experiments at other large international facilities, such as Diamond Light Source and Advanced Photon Source.

Read more on the LNLS website

Image: Artistic reconstruction of Spongiophyton nanum during the Early Devonian period in the polar environments of the Paraná Basin. Image from “The rise of lichens during the colonization of terrestrial environments”

Credit: Science Advances, 2024. Available at: https://www.science.org/doi/10.1126/sciadv.adw7879

Digging into the origin of lizards

A new fossil from Devon reveals what the oldest members of the lizard group looked like, and there are some surprises, according to a research team from the University of Bristol. The team teamed up with the ESRF to shed light on this exceptional 242-million-year-old fossil. The study is published in Nature.

Today, lizards and their relatives, such as snakes, together with the unique tuatara from New Zealand, are the most successful group of land vertebrates, with over 12,000 species – more than birds and more than mammals. But what is it about lizards, snakes and the tuatara, called collectively the Lepidosauria, that has made them so successful?

Surprising insights into lizard origins

It was always expected that the first lepidosaurs would have had some of the lizard characters such as a partially hinged skull, an open lower temporal bar, and abundant teeth on the roof of the mouth (palate). These are all features of modern lizards and snakes that enable them to manipulate large prey by opening their mouths super-wide (skull hinge) and use teeth on the palate to grasp wriggling small prey animals.

The lower temporal bar is essentially the cheek bone, a bony rod that runs between the cheek and the jaw hinge and is absent in lizards and snakes today. Snakes and many lizards have all these features, as well as some additional flexibility of the skull. Only the tuatara has a complete lower temporal bar, giving it an archaic look reminiscent of some of the earliest and ancestral reptiles; and it also has some large palatal teeth.

“The new fossil shows almost none of what we expected,” said Dan Marke, Master student in Palaeobiology at Bristol. “It has no teeth on the palate, and no sign of any hinging. It does, though, have the open temporal bar, so one out of three. Not only this, but it possesses some spectacularly large teeth compared to its closest relatives.”

Unlocking fossil secrets with synchrotron X-rays

“In modern palaeontological studies we often X-ray scan the fossils,” added Dr David Whiteside, from the University of Bristol. “But the exceptional resolution and quality of scans from synchrotron X-ray sources show us all the fine details and save any risk of damage.”

To study this tiny fossil from the Middle Triassic, the team came to the European Synchrotron (ESRF), to the new beamline BM18 dedicated to high sensitivity phase-contrast tomography in large and complex samples, where they teamed up with Vincent Fernandez, paleontologist at the ESRF. “This fossil is a good example of what makes a beamline like ESRF’s BM18 shine: the specimen itself is only a few centimetres in size, embedded in a large piece of rock, and it requires high-energy phase-contrast imaging — the flagship technique of BM18.” says Fernandez.

“When you look at the fossil, the whole skeleton sits in the palm of your hand,” explained Michael Benton, Professor of Vertebrate Paleontology in the School of Earth Sciences at the University of Bristol. “But after the scans and the hard work of our students cleaning up the scan data, we can see the most amazing detail. The new beast has relatively large triangular-shaped teeth and probably used these to pierce and shear the hard cuticles of its insect prey, pretty much as the tuatara does today.”

“The new animal is unlike anything yet discovered and has made us all think again about the evolution of the lizard, snakes and the tuatara,” said Dan Marke. “We had to give it a name to distinguish it from everything else, and we chose Agriodontosaurus helsbypetrae, quite a mouthful, meaning ‘fierce toothed lizard from the Helsby rock”, after the Helsby Sandstone Formation in which it was discovered.

Read more on ESRF website

A new extinct species of coelacanth discovered thanks to the ESRF

Scientists from the Natural History Museum (MHNG) and the University of Geneva (UNIGE) have discovered a new species of coelacanth, a fish considered to be a living fossil that only had two species known until now. This finding was possible thanks to the experiments done at the ESRF. The work is out in the journal PlosOne.

Fossilisation is a process that allows the preservation of plants and animals in rocks for
hundreds of millions of years. During this period, geological upheavals often deteriorate
fossils and paleontologists put great deal of effort and imagination into reconstructing
organisms as they were when they were alive.

A team of paleontologists from the MHNG and UNIGE, in collaboration with researchers from the Senckenberg Research Institute, Natural History Museum in Frankfurt am Main (Germany) and the ESRF, have just published a paper that shows the discovery of some 240-million-year-old coelacanth fossils, which show extremely detailed characteristics of of their preserved skeleton that had never been observed before.

Coelacanths are fish of which there are only two current species and which, with a few
exceptions, evolved slowly over more than 400 million years. The fossils studied by
the international team were discovered in clay nodules from the Middle Triassic period in Lorraine (France), near Saverne. The specimens, about fifteen centimetres long, are
preserved in three dimensions.

Some specimens were analysed at the ESRF in Grenoble. After hundreds of hours of work consisting of virtually individualising the bones of the skeleton by computer, the team obtained virtual 3D models of the fossils that can be easily studied. 

The results enabled the team to reconstruct the skeleton of these fish with a level of detail never obtained before for this type of fossil.

Read more on ESRF website

Scientific discoveries: Acynodon between Technology and Palaeontology

A major study conducted at the paleontological site of Villaggio del Pescatore, in Friuli-Venezia Giulia, has revealed new information on the appearance of the Italian territory at the time of the dinosaurs. This project, a collaboration between the Municipality of Trieste and Zoic s.r.l., led to the extraction and preparation of numerous fossil finds, including those of the rare crocodile Acynodon, a semi-aquatic reptile that lived during the Cretaceous period.
Cooperation with Elettra revealed previously unseen details of Acynodon’s skull that were impossible to obtain before without damaging the fossil. Although similar to a small crocodile, its teeth are surprising: the front teeth are adapted to grasp small prey, while the massive, rounded rear teeth shred shells. This unique adaptation suggests that the Cretaceous crocodiles at the Fisherman’s Village were very different in size, shape and diet to those of today. The results of the research were published in the scientific journal The Anatomical Record (Muscioni et al., 2024).

Read more on Elettra website

520-million-year-old worm fossil solves mystery of how modern insects, spiders and crabs evolved

X-ray computed tomography (XCT) studies on Diamond’s I13-2 beamline reveal beautiful ancient structures

A new study led by researchers at Durham University, published in Nature, have uncovered an incredibly rare and detailed fossil, named Youti yuanshi, that gives a peek inside one of the earliest ancestors of modern insects, spiders, crabs and centipedes.

This fossil dates back over 520 million years to the Cambrian period, when the major animal groups we know today were first evolving.

This fossil belongs to a group called the euarthropods, which includes modern insects, spiders and crabs. What makes this fossil so special is that the tiny larva, no bigger than a poppy seed, has its internal organs preserved in exceptional quality.

Using advanced scanning techniques of synchrotron X-ray tomography at Diamond Light Source, the UK’s national synchrotron science facility, researchers generated 3D images of miniature brain regions, digestive glands, a primitive circulatory system and even traces of the nerves supplying the larva’s simple legs and eyes.

Read more on Diamond website

Image: Side-on view of Youti yuanshi, showing internal organ systems.

Credit: Emma J. Long

Mammals grew more slowly in the Jurassic than they do today

Analysis of two unique Jurassic fossil discoveries from the Isle of Skye (Scotland) have shown that mammals in the time of the dinosaurs grew more slowly and lived longer than mammals today. Synchrotron studies of the fossils at the ESRF contributed to the research. The findings are published in Nature.

An international team of researchers led by National Museums Scotland discovered two Krusatodon kirtlingtonensis fossils, one adult and one juvenile, both in Skye. These mouse-sized mammals lived around 166 million years ago. The specimens represent the only juvenile Jurassic mammal skeleton known to science, while the adult is one of the most intact mammal skeletons from this time period in the world.

The fact that both specimens, the juvenile and the adult, belong to the same species of early mammals is unique and has allowed groundbreaking comparative analysis into their growth and life history. This was possible thanks to X-ray computed tomography carried out in several laboratories, including cutting-edge facilities, notably the ESRF’s ID19 beamline.

The ages of the specimens at death were determined using X-ray imaging to count the growth rings in their teeth. The adult was found to be around 7 years old and the juvenile between 1 – 2 years, and still in the process of replacing its baby teeth.

Shift in mammal growing patterns

Today, small mammals have significantly shorter lifespans, some living as little as 12 months, and maturing quickly, losing their baby teeth and weaning within months of birth. The Krusatodon fossils reveal for the first time that the earliest mammals didn’t finish replacing their teeth until well into their second year of life, possibly later. This tells us that a fundamental shift in the growth patterns and life expectancy of mammals must have taken place during or after the Middle Jurassic.

The specimens were discovered decades apart, with the adult being one of the earliest Jurassic finds on Skye in the 1970s, while the juvenile was discovered in 2016.

Read more on ESRF website

New species of rare 100-million years old flying reptile found in Australia

An international team of academic researchers led by Curtin University have provided a description of a new species of pterosaur, a flying reptile, in the journal Scientific Reports found in Australia.

The fossilised reptile, Haliskia peterseni, Petersen’s sea phantomwhich was found by and extracted by fossil enthusiast Kevin Petersen is believed to have lived around 100 million years ago in eastern Gondwana (now outside Richmond in Central Queensland).

In a report in the Conversation, the lead author of the paper, Curtin University PhD candidate, Adele Pentland described the fossil as only the second partial pterosaur skeleton ever found in Australia.

The pterosaur had a lightweight skeleton with hollow thin-walled bones for flight, that were often not preserved.

The preserved bones included a partial skull and complete mandible, bones that support the tongue and larynx, and parts of the skeleton below the head. 

The bones and teeth suggest Petersen’s Sea phantom consumed fish and squid from a shallow inland sea known as Eromanga.

Senior Instrument scientist Dr Joseph Bevitt assisted the team with an analysis using thermal neutron tomography on the instrument Dingo at the Australian Centre for Neutron Scattering and complementary X-ray CT using the Imaging and Medical beamline at the Australian Synchrotron.

Read more on ANSTO website

Image: B–C are renders of a digital model generated from Dingo neutron scans. 


New ant genus named after DESY

Researchers spot previously unknown extinct ant in 20 million-years-old amber

An international team of scientists led by Friedrich Schiller University Jena has identified a previously unknown extinct ant in a unique piece of African amber about 20 million years old. The team used DESY’s X-ray light source PETRA III to examine the critical fossil remains from 13 individual animals at a specialised measuring station operated by Helmholtz-Zentrum Hereon and realised that these could not be attributed to any known species. The new species even establishes a completely new genus of primordial ants, as the scientists from the Universities of Jena, Rennes (France) and Gdansk (Poland) as well as from Hereon report in the scientific journal Insects. The new genus was named after DESY, the new species after Hereon: With the scientific name †Desyopone hereon gen. et sp. nov., the discoverers honour the two research institutions, which had contributed significantly to this discovery with modern imaging methods.


“It is a great honour that DESY is the namesake of the new primordial ant genus,“ emphasises Christian Schroer, Leading Scientist of PETRA III at DESY. “And we are delighted that we can provide the brilliant X-ray light for such top-class research with our facility.” PETRA III is a particle accelerator that sends fast electrons on slalom paths, where they emit highly focused X-ray light that can be used to study the finest details of a wide variety of samples.

Read more on the DESY website

Image: Magnified (about 100,000 fold) representation of the extinct ant in a glass block in the Hereon measuring station at DESY’s X-ray light source PETRA III, where the original had been studied.

Credit: DESY, Marta Mayer

Weird fossil is not our ancestor

It has recently been supposed that humans could trace their ancestry back to a strange microscopic creature with a mouth and no anus. Thanks to analysis of 500 million year old fossils at the Swiss Light Source SLS, we can be relieved to find out this is not true: Saccorhytus is not a deuterostome like us, but an ecdysozoan. The findings, published today in Nature, make important amendments to the early phylogenetic tree and our understanding of how life developed.

In 535 million year old rocks in China is a mysterious microfossil whose evolutionary affinity is hotly debated. Saccorhytus was originally described in 2017 as an ancestral deuterostome, a member of the group from which our own deep ancestors emerged. It is microscopic in size – about a millimetre in diameter – and resembles a spikey, wrinkly sack, with a mouth surrounded by spines and holes that were interpreted as pores for gills – a primitive feature of the group. This made for a very unexpected origin of deuterostomes: within sand-grain sized organisms that may have lived among the sand or floating in the sea. However, the evidence supporting this view was always very weak – were those holes around the mouth really gill pores?

The researchers tried to address this question by collecting new specimens of Saccorhytus, dissolving tonnes of rock with strong vinegar and picking through the resulting grains of sand for these rare fossils. The fossils are no longer rare – the teams recovered hundreds of specimens, many much better preserved than any seen before, providing new insights into the anatomy and evolutionary affinity of Saccorhytus.

“Some of the fossils are so perfectly preserved that they look almost alive,” says Yunhuan Liu, professor in Palaeobiology at Chang’an University, Xi’an, China. “Saccorhytus was a curious beast, with a mouth but no anus, and rings of complex spines around its mouth.”

Read more on the PSI website

Image: The reconstructions show the fossil of Saccorhytus from the front

Credit: Graphic: Dinghua Yang

Clay haloes preserve ancient fossils: an Infrared view

A UK-US collaboration has shed light on the preservation of ancient microfossils. As outlined in Interface Focus, the presence of kaolinite haloes surrounding the tiny fossils is believed to have kept destructive bacteria at bay, stopping decay. The small molecular differences of the clay around the fossils called for the Synchrotron IR microbeam.

Fossils that are over 500 million years old are extremely rare because early organisms were microscopic, only the thickness of a hair, and lacked hard parts that can resist decay. To understand how these early organisms could be preserved, IR microspectroscopy was performed using the Multimode InfraRed Imaging and Microspectroscopy (MIRIAM) beamline at Diamond Light Source. IR microanalysis allowed researchers to identify at the micron scale the minerals surrounding 800–1,000 million-year-old microfossils, and it was determined that an aluminium-rich clay known as kaolinite was responsible for their preservation. Kaolinite was previously shown to be toxic to bacteria, so its presence prevented the early organisms from being destroyed.

These observations suggest that the early fossil record might be biased to regions that are rich in kaolinite, such as the tropics. Moreover, the lack of animal fossils in these samples, despite having favourable fossilisation conditions demonstrates that animals were yet to evolve 800 million years ago.

Read more on the Diamond Light Source website

Image: Light microscopy images (left) indicating the position of the microfossils (red boxes) and Synchrotron-based IR maps (right) showing the compositional variation of the clay around the fossil (as ratio of 3694 cm^-1 band vs the M-OH region). 

Credit: Data taken at MIRIAM beamline B22 at Diamond.

How did birds escape from mass extinction? NSRRC discovered the secret hidden within their teeth!

The research team consists of Dr. Wang Chun-Chieh and Mr. Chiang Cheng-Cheng from the National Synchrotron Radiation Research Center (NSRRC), Dr. Li Zhiheng  and academician Dr. Zhou Zhonghe from the Institute of Vertebrate Paleontology and Paleoanthropology, Prof. Huang E-Wen from the Department of Materials Science and Engineering, NCTU, and Mr. Hsiao Kiko from Mr. Fossil, spent 3 years on the research and analysis of the tooth evolution from Theropoda, a dinosaur clade that is most related to ancient birds, to ancient birds, using synchrotron Transmission X-Ray Microscopy (TXM). It is the first time in history that the research team discovered the Porous Mantle Dentin of ancient birds has deteriorated and disappeared, which confirmed that the transformation of feeding habits of birds fortunately helped them to escape from a mass extinction event. The research result was published in the international journal BMC Evolutionary Biology on April 21st.

Cretaceous–Paleogene Extinction Event

How did birds, descendants of dinosaurs, escape from the mass extinction before 65 Mya, has always puzzled scientists. When meteorites struck the earth, the already frequent volcanic eruptions led to a significant amount of dust entering the atmospheric layer, which blocked the sun and hindered photosynthesis for plants, thus induced further severe impact to the global ecosystem. When plants no longer received energy from the sun, herbivores began dying due to no food sources, which eventually led to the successive extinction of carnivores. This series of food chain collapses resulted in the extinction of 75% of organisms on earth, for which the spotlight lies on the mass extinction of non-avian dinosaurs (Birds is the only survived dinosaur lineage).

Read more on the NSRRC website

Image: Fossil specimens of Sapeornis of Avialae and Microraptor of Theropoda during early Cretaceous.

Synchrotron X-ray sheds light on some of the world’s oldest dinosaur eggs

An international team of scientists led by the University of the Witwatersrand (South Africa), has been able to reconstruct the skulls of some of the world’s oldest known dinosaur embryos in 3D at the ESRF.

They found that the skulls develop in the same order as those of today’s crocodiles and chickens. The findings are published today in Scientific Reports.
University of the Witwatersrand scientists publish 3D reconstructions of the ~2cm-long skulls of some of the world’s oldest dinosaur embryos in an article in Scientific Reports. The embryos, found in 1976 in Golden Gate Highlands National Park (Free State Province, South Africa) belong to South Africa’s iconic dinosaur Massospondylus carinatus, a 5-meter long herbivore that nested in the Free State region 200 million years ago.

The scientific usefulness of the embryos was previously limited by their extremely fragile nature and tiny size. In 2015, scientists Kimi Chapelle and Jonah Choiniere, from the University of Witwatersrand, brought them to the European Synchrotron (ESRF) in Grenoble, France for scanning. At the ESRF, an 844 metre-ring of electrons travelling at the speed of light emits high-powered X-ray beams that can be used to non-destructively scan matter, including fossils. The embryos were scanned at an unprecedented level of detail – at the resolution of an individual bone cell.

>Read more on the ESRF website

Image: Watercolour painting of the Massospondylus carinatus embryos at 17% through the incubation period, 60% through the incubation period and 100% through the incubation period.
Artwork: Mélanie Saratori.

Lucy had an ape-like brain, but prolonged brain growth like humans

A study led by the Max Planck Institute for Evolutionary Anthropology reveals that Lucy’s species, Australopithecus afarensis, had an ape-like brain.

However, the protracted brain growth suggests that infants may have had a long dependence on caregivers, as in humans. The study, in collaboration with the ESRF, is published in Science Advances.

The species Australopithecus afarensis, well-known as Lucy’s species, inhabited East Africa more than three million years ago, and occupies a key position in the hominin family tree.. “Lucy and her kind provide important evidence about early hominin behavior. They walked upright, had brains that were around 20 percent larger than those of chimpanzees and may have used sharp stone tools,” explains senior author Zeresenay Alemseged from the University of Chicago, who directs the Dikika field project in Ethiopia, where the skeleton of an Australopithecus afarensis child, known as Dikika child and nicknamed Selam, was found in the year 2000. “Our new results show how their brains developed, and how they were organized,” adds Alemseged.

>Read more on the European Synchrotron website

Image: Brain imprints in fossil skulls of the speciesAustralopithecus afarensis(famous for “Lucy” and the “Dikika child” from Ethiopia pictured here) shed new lighton the evolution of brain growth and organization. The exceptionally preservedendocranial imprint of the Dikika child reveals an ape-likebrain organization, and nofeatures derived towards humans.
Credit: Philipp Gunz, MPI EVA Leipzig.

Rare dinosaur skin offers insights into evolution

International team of scientists finds rare piece of preserved dinosaur skin and, in a world first, compares it directly to modern animals to gain insight into evolution.

Mauricio Barbi has loved dinosaurs for as long as he can remember and dreamed of one day being a paleontologist. “When I was a kid, I loved space, stars, and dinosaurs,” he said.
Fast-forward a few years, and Barbi is trekking through the Alberta Badlands alongside famous paleontologist Philip Currie, whose professional life became the inspiration for characters in the Jurassic Park movies. During this fieldwork, he also met paleontologist and rising star, Phil Bell, who had recently found a well-preserved hadrosaur. When he joined Bell in the excavations, Barbi was shocked and thrilled by what they discovered.

>Read more on the Canadian Light Source website

Picture of the dig site.

Analyzing the world’s oldest woddy plant fossil

Scientists investigate the early evolution of tissue systems in plants.

Mapping the evolution of life on Earth requires a detailed understanding of the fossil record, and scientists are using synchrotron-based technologies to look back—way, way back—at the cell structure and chemistry of the earliest known woody plant. Dr. Christine Strullu-Derrien and colleagues used the Canadian Light Source’s SM[1] beamline at the University of Saskatchewan to study Armoricaphyton chateaupannense, an extinct woody plant that is about 400 million years old. Their research focused on lignin, an organic compound in the plant tracheids, elongated cells that help transport water and mineral salts. Lignin makes the cells walls rigid and less water permeable, thereby improving the conductivity of their vascular system.
Strullu-Derrien, a scientific associate at the Natural History Museum in London, England and the Natural History Museum in Paris, France, had described A. chateaupannense some years ago and returned to it for this project.
“Studies have been done previously on Devonian plants but they were not woody,” she said. “A. chateaupannense is the earliest known woody plant and it’s preserved in both 2D form as flat carbonaceous films and 3D organo-mineral structures. This allows for comparison to be done between the two types of preservation,” she said.
Although the fossils used in the study were collected in the Armorican Massif, a geologically significant region of hills and flatlands in western France, Strullu-Derrien said early Devonian woody plants have also been found in New Brunswick and the Gaspé area in Quebec “although these are 10 million years younger than the French one.”

>Read more on the Canadian Light Source website

Image: A, photograph of Armoricaphyton chateaupannense preserved in 2D as carbonaceous thin films. B, SEM image of a transverse section of an axis of a specimen of A. chateaupannense preserved in 3D showing the radially aligned tracheids.

3D X-ray view of an amber fossil

Research team unravels secrets of 50-million-year-old parasite larvae

With the intense X-ray light from DESY’s particle accelerator PETRA III, researchers have investigated an unusual find: a 50-million-year-old insect larva from the era of the Palaeogene. The results offer a unique insight into the development of the extinct insect, as the team reports in the journal Arthropod Systematics & Phylogeny.
When the biologist Hans Pohl from the Friedrich Schiller University in Jena tracked down an insect fossil trapped in amber on eBay, the joy of discovery was great: it was a special specimen, a 50-million-year-old larva of an extinct twisted-wing insect from the order of Strepsiptera. But in order to be able to investigate it in detail, he needed the help of materials researchers from the Helmholtz Centre in Geesthacht, which operates a beamline at DESY’s X-ray source PETRA III.
Strepsiptera are parasites that infest other insects, such as bees and wasps, but also silverfish. “In most of the approximately 600 known species, the females remain in their host throughout their lives,” says Pohl. “Only the males leave it for the wedding flight, but then live only a few hours.” But there are exceptions: In species that infest silverfish, the wingless females also leave their host.

>Read more on the PETRA III at DESY website

Image: The fossil in amber. Its age lies between 42 to 54 million years. This fossil was scientifically examined at the Institute for Zoology and Evolutionary Research at the University of Jena.
Credit: FSU, Hans Pohl