Lightsources.org

Magnetic patterning by electron beam assisted carbon lithography

2019/02/112019/03/11

The exploitation of the unique physical properties of thin films and heterostructures are opening intriguing opportunities for magnetic storage technology. These artificial materials will in fact enable novel architectures for a multitude of magnetic devices and sensors, promoting a significant improvement in storage density, functionality and efficiency. Their usage will also contribute to diminish the consumption of materials that are rare and difficult to extract, being often detrimental to the environment. With these objectives in mind, researchers are now looking with great attention at the combination of thin ferromagnetic layers with 2-dimensional crystals like graphene and transition metal dichalcogenides. Due to their layered structure, these systems exhibit very favorable magnetic properties, which can be tuned through thickness and interfacial interactions. For instance, graphene-cobalt stacks display an enhanced perpendicular magnetic anisotropy, a feature that is especially important for non-volatile memories.
The fabrication of layered materials, however, is still a very challenging process. Not only it requires atomic precision in the deposition of the various layers but also the ability to create nano or microstructures of arbitrary shape. Conventional lithography in conjunction with chemical etching permits nowadays to sculpture the matter with great accuracy, at lateral resolution close to the nanometer. Yet, this approach poses an important limitation, that is, the material can only be shaped by erosion. The ability to vary the chemical composition, by adding atoms for example, is instead very desirable for many applications. To date, this can be done by stimulating the fragmentation of suitable carrier molecules using photons or electrons. So far, various methods based on focused beam induced processing methods have been devised, which can be readily employed to deposit carbonaceous layers and metallic nanostructures. These methods, however, cannot be applied when ultra-clean, ultra-high vacuum (UHV) conditions are needed, as happens for the case of semiconductor industry.

>Read more on the Elettra website

Figure 1. (left) Scheme of the protocol for printing chemo-magnetic patterns in ultrathin Co on Re(0001). (a) The film is exposed to CO at room temperature. The irradiation with a focused electron beam (yellow) stimulates the dissociation of the molecule, which results in the accumulation of atomic carbon on the surface. (b) Subsequently, the sample is annealed above 170 °C to desorb molecularly adsorbed CO from the non-irradiated surface regions. (c) LEEM image of an e-beam irradiated disk. Disk diameter: 1 μm; Co thickness: 4 atomic layers; irradiation energy: 50 eV; CO dose: 9.75 L; (d) Intensity profile across the orange line in the LEEM image in (c) and fit using a step function convoluted with a Gaussian of full width at half-maximum of 30 nm. The dashed blue lines indicate the 15–85% distance between minimum and maximum intensity. (e) XMCD-PEEM image of the same region at the Co L3 edge. (f) Intensity profiles across the blue and orange dashed lines in the XMCD-PEEM image in (e). The magnetic stripes indicate out-of-plane magnetic anisotropy. The stripe period is 120 nm. Adapted with permission from [1].
Copyright (2018) American Chemical Society.

Scientist discover that charcoal traps ammonia pollution

2019/02/112019/03/19

Discovery could have implications for agricultural management and climate change mitigation

Cornell University scientists Rachel Hestrin and Johannes Lehmann, along with collaborators from Canada and Australia, have shown that charcoal can mop up large quantities of nitrogen from the air pollutant ammonia, resulting in a potential slow-release fertilizer with more nitrogen than most animal manures or other natural soil amendments. The results were published Friday in Nature Communications.

Ammonia is a common component of agricultural fertilizers and provides a bioavailable form of the essential nutrient nitrogen to plants. However, ammonia is also a highly reactive gas that can combine with other air pollutants to create particles that travel deep into the lungs, leading to a host of respiratory issues. It also indirectly contributes to climate change when excess fertilizer inputs to soil are converted into nitrous oxide, a potent greenhouse gas.

In Canada, ammonia emissions have increased by 22 per cent since 1990, and 90 per cent are produced by agriculture, particularly from manures, slurries and fertilizer applications. Mitigating this pollutant—without limiting fertilizers and food growth for our growing world population—is key to a sustainable future.

Image: Rachel Hestrin (right) on the beamlines at Canadian Light Source with fellow Cornell researcher Angela Possinger.

Enzyme structure of bacteria that causes tuberculosis

2019/02/072019/02/14

Results on its interaction with antibiotics may lead to the development of new forms of treatment for this disease.

Tuberculosis is a chronic infection usually caused by a bacterium called Mycobacterium tuberculosis. This bacterium infects cells of the immune system called alveolar macrophages, which are responsible for removing pollutants and microorganisms from the surface of the alveoli, where the exchange of gases occurs during respiration.
It is estimated that approximately two billion people worldwide are infected with M. tuberculosis without symptoms. However, the clinical manifestations of the disease may appear at any time in life, especially when the immune system is weakened, such as due to malnutrition or diseases such as cancer and AIDS.
Tuberculosis is considered a curable disease when the patient is diagnosed and treated promptly with antibiotics. Nevertheless, the chronicity of this infection makes it difficult to eradicate bacteria altogether. Generally, patients must take the medication for several months, making it harder for them to persist in the treatment and favoring the emergence of antibiotic-resistant bacteria. In recent years, the emergence of new bacteria, resistant to routine treatments, has been a worldwide concern and it is imperative to seek new therapeutic strategies against this disease.

Image: (extract, full image here) Elements of the secondary structure of L,D-transpeptidase-3 from Mycobacterium tuberculosis acylated by an acetyl fragment derived from faropenem. Beta sheets in red, α-helices in yellow and the loops are shown in green. The figure shows, at the amino terminus (N-ter), the bacterial domain similar to immunoglobulin (BIg) and in the carboxy terminus the catalytic domain (CD). B-loop is a unique structure of this enzyme when compared to the other M. tuberculosis L,D-transpeptidases. In blue is shown an acetyl fragment covalently attached to cysteine 246 at the active site of the enzyme. Figure taken with Pymol.

Rob Norris joins Canadian Light Source

2019/02/072019/02/07

Former provincial cabinet minister Rob Norris is joining the Canadian Light Source at the University of Saskatchewan, as Senior Government Relations Officer.

“Rob brings a unique depth of experience in our parliamentary system, as well as key policy areas, including innovation, post-secondary education, and industry-related research. I have no doubt he will be of enormous help in strengthening our relationships with government stakeholders at every level, and increasing awareness about the valuable contributions our scientists are making,” said Rob Lamb, CLS Chief Executive Officer.

Image: CLS CEO Rob Lamb, Environmental & Earth Science Manager Chithra Karunakaran and Senior Government Relations Officer Rob Norris talk on the CLS mezzanine.

Simulating meteorite impacts in the lab

2019/02/052019/02/12

Scientists monitor the response of feldspar minerals to rapid compression

A US-German research team has simulated meteorite impacts in the lab and followed the resulting structural changes in two feldspar minerals with X-rays as they happened. The results of the experiments at DESY and at Argonne National Laboratory in the US show that structural changes can occur at very different pressures, depending on the compression rate. The findings, published in the 1 February issue of the scientific journal Earth and Planetary Science Letters (published online in advance), will aid other scientist to reconstruct the conditions leading to impact craters on Earth and other terrestrial planets.

Image: Scanning electron microscopy image of the micro-structure of albite prior to the rapid compression experiments.
Credit: Stony Brook University, Lars Ehm

Untangling a strange phenomenon in lithium-ion batteries

2019/02/052019/03/13

New research offers the first complete picture of why a promising approach of stuffing more lithium into battery cathodes leads to their failure.

A better understanding of this could be the key to smaller phone batteries and electric cars that drive farther between charges.
The lithium-ion batteries that power electric vehicles and phones charge and discharge by ferrying lithium ions back and forth between two electrodes, an anode and a cathode. The more lithium ions the electrodes are able to absorb and release, the more energy the battery can store.
One issue plaguing today’s commercial battery materials is that they are only able to release about half of the lithium ions they contain. A promising solution is to cram cathodes with extra lithium ions, allowing them to store more energy in the same amount of space. But for some reason, every new charge and discharge cycle slowly strips these lithium-rich cathodes of their voltage and capacity.
A new study provides a comprehensive model of this process, identifying what gives rise to it and how it ultimately leads to the battery’s downfall. Led by researchers from Stanford University and the Department of Energy’s SLAC National Accelerator Laboratory and Lawrence Berkeley National Laboratory, it was published today in Nature Materials.

Image: A mysterious process called oxygen oxidation strips electrons from oxygen atoms in lithium-rich battery cathodes and degrades their performance, shown at left. Better understanding this property and controlling its effects could lead to better performing electric vehicles.
Credit: Gregory Stewart/SLAC National Accelerator Laboratory)

Revealing the path of a metallodrug in a breast cancer cell

2019/02/042019/02/15

Some types of cancer cannot be treated with classical chemotherapy. Scientists from Inserm, CNRS, Sorbonne University, PSL university, University Grenoble Alpes and ESRF, the European Synchrotron, are working on a metallorganic molecule as an antitumor drug. Their research has given thorough insights into its mechanism in attacking cancer cells. This study is published in Angewandte Chemie.

Triple-negative breast cancer, which represents 10-20% of breast cancers, is not fuelled by hormones. In fact, it tests negative for estrogen and progesterone receptors and excess HER2 protein. This means that it does not respond to hormonal therapy and antibody medicines. Given that it is more aggressive and often has a higher grade than other types of breast cancer, the scientific community is relentlessly trying to find a treatment.

>Read more on the ESRF website

Image: X-ray fluorescence maps of potassium, an essential physiological element of the cell (K, in pink), and, osmium a constitutive element of the metallocifen (Os, in green), in hormone-independent breast cancer cells exposed to the osmocenyl-tamoxifen derivatives.
Credit: Sylvain Bohic.

What keeps spiders on the ceiling?

2019/02/042019/02/26

DESYs X-ray source PETRA III reveals details of adhesive structures of spider legs

Hunting spiders easily climb vertical surfaces or move upside down on the ceiling. A thousand tiny hairs at the ends of their legs make sure they do not fall off. Like the spider’s exoskeleton, these bristle-like hairs (so-called setae) mainly consist of proteins and chitin, which is a polysaccharide. To find out more about their fine structure, an interdisciplinary research team from the Biology and Physics departments at Kiel University and the Helmholtz-Zentrum Geesthacht (HZG) examined the molecular structure of these hairs in closer detail at DESY’s X-ray light source PETRA III and at the European Synchrotron Radiation Facility ESRF. Thanks to the highly energetic X-ray light, the researchers discovered that the chitin molecules of the setae are specifically arranged to withstand the stresses of constant attachment and detachment. Their findings could be the basis for highly resilient future materials. They have been published in the current issue of the Journal of the Royal Society Interface.

Image: In order to find out why the hunting spider Cupiennius salei adheres so well to vertical surfaces, the interdisciplinary research team investigates the tiny adhesive hairs on the spider legs.
Credit: Universität Kiel, Julia Siekmann

Classic double-slit experiment in a new light

2019/02/012019/02/12

An international research team led by physicists from Collaborative Research Centre 1238, ‘Control and Dynamics of Quantum Materials’ at the University of Cologne has implemented a new variant of the basic double-slit experiment using resonant inelastic X-ray scattering at the European Synchrotron ESRF in Grenoble. This new variant offers a deeper understanding of the electronic structure of solids. Writing in Science Advances, the research group have now presented their results under the title ‘Resonant inelastic x-ray incarnation of Young’s double-slit experiment’.

The double-slit experiment is of fundamental importance in physics. More than 200 years ago, Thomas Young diffracted light at two adjacent slits, thus generating interference patterns (images based on superposition) behind this double slit. That way, he demonstrated the wave character of light. In the 20th century, scientists have shown that electrons or molecules scattered on a double slit show the same interference pattern, which contradicts the classical expectation of particle behaviour, but can be explained in quantum-mechanical wave-particle dualism. In contrast, the researchers in Cologne investigated an iridium oxide crystal (Ba3CeIr2O9) by means of resonant inelastic X-ray scattering (RIXS).

Image: Beamline ID20, where the experiments took place.
Credit: P. Jayet.

Virtual lens improves X-ray microscopy

2019/02/012019/02/21

PSI researchers are first to transfer state-of-the-art microscopy method to X-ray imaging

X-rays provide unique insights into the interior of materials, tissues, and cells. Researchers at the Paul Scherrer Institute PSI have developed a new method that makes X-ray images even better: The resolution is higher and allows more precise inferences about the properties of materials. To accomplish this, the researchers moved the lens of an X-ray microscope and recorded a number of individual images to generate, with the help of computer algorithms, the actual picture. In doing so they have, for the first time ever, transferred the principle of so-called Fourier ptychography to X-ray measurements. The results of their work, carried out at the Swiss Light Source SLS, are published in the journal Science Advances.

Image: Klaus Wakonig and Ana Diaz, together with other PSI researchers, have transferred the principle of Fourier ptychography to X-ray microscopy for the first time ever.
Credit: Paul Scherrer Institute/Markus Fischer

Copper mobilization and immobilization

2019/01/312019/01/31

… along an organic matter and redox gradient- insights from a mofette site.

The metal copper (Cu) is known to be an essential trace element for many organisms but it is also considered a severe contaminant at higher concentrations. Especially in soils with changing redox conditions, Cu binding mechanisms and, thus, Cu mobility are hard to predict. The metal is known to have a high affinity to soil organic matter (SOM), i.e., it can either be sequestered by adsorption to solid-phase organic matter or mobilized by complexation with dissolved organic matter. Under reducing conditions, Cu(II) can also be reduced to Cu(I) via biotic and abiotic processes and precipitate in the form of sulfidic minerals.
>Read more on the SSRL website
Image: Picture of the investigated mofette site (left) and Cu sorption isotherms determined for mofette, transitions, and reference soil in a Cu spike experiment (right).
Credit: Reprinted with permission from Mehlhorn et al. 2018, ES&T, DOI: 10.1021/acs.est.8b02668, Copyright 2018 American Chemical Society

Visualising shared-ligand intermediates of metal exchange

2019/01/302019/01/31

Visualized by Rapid Freeze Quench and Selenium EXAFS of Se-Labeled Metallochaperones. A Paradigm for Studying Copper-Mediated Host-Pathogen Interactions.

Mammalian hosts defend against invading pathogens via the import of toxic concentrations of copper into the phagolysosome. To combat this host-defense strategy, gram negative pathogens respond via sophisticated copper export systems which are able to neutralize the copper onslaught². Chemical mechanisms of metal exchange between protein components of metal exporters are thus important factors in understanding pathogenic virulence and are believed to occur via formation of intermediates in which the metal is coordinated by ligands derived from each partner. However, since these ligand sets are often similar (or even identical), following the kinetics of transfer has been challenging, and has required the development of sophisticated spectroscopic approaches.

>Read more on the SSRL website

Image: Middle: Se EXAFS Fourier transforms at increasing time points for the reaction of SeM-labeled apo-CusF with unlabeled Cu(I)-loaded CusB. Left and right: in silico models of the proposed protein-protein interface and shared-ligand intermediate.

Biofortification of field-grown cassava

2019/01/292019/02/11

Micronutrient deficiency, sometimes called the “hidden hunger,” causes severe health problems in hundreds of millions of people worldwide, and is particularly damaging to children, in whom it can impair both physical and cognitive development.

Biofortification is one of the most promising tools available for alleviating this problem, but is a multifaceted challenge involving not only creating nutrient-rich crop varieties, but also ensuring bioavailability of these nutrients, protecting against increased uptake of toxins such as cadmium, and adoption by affected populations.

In an open-access paper published this week in Nature Biotechnology, a team led by researchers at the Donald Danforth Center for Plant Science in St. Louis reports successful development of an iron- and zinc- fortified variety of cassava, representing a substantial leap forward in this effort. The interdisciplinary effort reports that the new variety accumulates 7-18 times greater iron and 3-10 times greater zinc than controls, and includes detailed evaluation of the accessibility of these nutrients after being prepared for food. Adoption of this cassava variety could provide up to half of the iron and two-thirds of the zinc required for women and children among particular West African populations who rely on cassava for a substantial fraction of overall diet.

>Read more on the CHESS website

Image: X-ray Fluorescence images, obtained at CHESS, comparing localization of Fe, Zn, and Ca in the stems and storage roots of several genetically distinct varieties of Cassava; (from Narayanan et al, doi: 10.1038/s41587-018-0002-1). Scale bars: 1 mm.

Project Director Dave Robin announces ALS-U project beamlines

2019/01/292019/02/13

Over the past year, a process involving ALS and ALS-U staff, the ALS user community, and external advisory committees has been ongoing to select the insertion-device beamlines that will be built and upgraded within the scope of the ALS-U Project. These beamlines will join existing ALS beamlines to form the full complement of capabilities that will be available at the upgraded ALS in several years. I am delighted to inform you that the selection process is now complete and to announce the result.

The ALS-U Project will build two new beamlines

a soft x-ray beamline in Sector 10, dubbed “FLEXON,” whose high-brightness coherent flux and multiple complementary techniques will probe the roles of multiscale heterogeneity in quantum materials; and
a tender x-ray beamline in Sector 8, whose coherent scattering and scanning spectromicroscopy capabilities will address challenges at the frontiers of diverse scientific areas, ranging from soft condensed matter and biomaterials to energy science and Earth and environmental sciences.

Image: ALS-U Project Director Dave Robin.

Synchrotron light unveils new insights about amytrophic lateral sclerosis

2019/01/282019/01/31

Synergetic combination of different imaging and spectroscopic synchrotron techniques performed in ALBA and APS (USA) has discovered new aspects about astrocytes cells of this neurodegenerative disease.

Results, published in Analytical Chemistry, show significant differences between ALS and control astrocytes, including structural, chemical and macromolecular anomalies. Amyotrophic lateral sclerosis (ALS) is a fatal progressive neurodegenerative disease that causes the degeneration and death of neurons that control voluntary muscles. Still today the causes of this disease are unknown in 90% of the cases. However, some of them are caused by the mutation of sod1 gene. This gene encodes an enzyme (SOD1) that is involved in cellular protection against oxidative stress. Mutations dramatically alter the biochemical properties of SOD1, in particular its metal binding affinity and its anti-oxidative activity levels. But it is still unknown how these mutations block the normal cell function and lead to death of motor neurons. The ALBA Synchrotron, in collaboration with researchers from the University of Belgrade Pavle Andjus and Stefan Stamenković (who accomplished his PhD thesis using these results) and Vladan Lučić from Max Planck Institute of Biochemistry (Germany), has studied with synchrotron light techniques and classical biochemical laboratory approaches the cellular structural and biochemical changes of this gene mutation in a transgenic animal model of ALS. In particular, scientists have analysed astrocytes, one kind of brain cells that are key players in pathological processes of this disease.

>Read more on the ALBA website

Image: Researcher Tanja Dučić during the experiment performed at ALBA, at the MIRAS beamline.

A timely solution for the photosynthetic oxygen evolving clock

2019/01/252019/01/31

XFEL Hub collaboration reveals the intermediates of the photosynthetic water oxidation clock

A large international collaborative effort aided by the XFEL Hub at Diamond Light Source has generated the most detailed time-resolved studies to date of a key protein involved in photosynthesis. The pioneering work, recently published in Nature, shows how photosystem II harnesses light energy to produce oxygen – insights that could direct a next generation of photovoltaic cells.
>Read more on the Diamond Light Source website

Image: this figure is issued from a video you can watch here.