We all love science!

#LightSourceSelfie from users of the Australian Light Source

Marta Krasowska (Associate Professor), Sarah Otto (PhD Student) and Stephanie MacWilliams (Early Career Researcher) are scientists based at the University of South Australia. They share a passion for soft matter research and conduct experiments at ANSTO’s Australian Synchrotron. Their research questions relate to structural ordering in soft matter and its relevance in applications such as food, personal care products, biomaterials and pharmaceuticals.

In their #LightSourceSelfie, Marta, Sarah and Stephanie discuss what attracted them to this area of research, how they felt the first time they conducted experiments at the Australian Synchrotron, the support they receive from the team based at the facility, their top tips for surviving night shifts and how their research will benefit from the new BioSAX beamline, which is part of the synchrotron’s major upgrade. When it came to single words to describe their research, they agreed on “Challenging, unpredictable and super rewarding!”

A welcoming and friendly community awaits!

Challenges are part of daily life at a synchrotron. In his #LightSourceSelfie, Tomasz talks about the importance of flexibility and how teams work together, adjusting to overcome challenges and get things done. When describing the synchrotron community, Tomasz says, “I think it is one of the most welcoming and friendly communities I have ever met.” Tomasz is driven by curiosity and the need to help others. He says, “Light sources are a nice combination of both because I can actually help people to solve their problems, their interesting scientific problems, and this gives me the everyday fulfilment.”

After over a decade working in infrared spectroscopy, Tomasz is excited that SOLARIS now has funding to construct an infrared beamline that will allow scientists to do cutting edge infrared imaging experiments of cells and tissues primarily for cancer diagnostics and understanding of biological systems.

To find out more about SOLARIS, visit https://lightsources.org/lightsources-of-the-world/europe/synchrotron-solaris/

Promising new extra-large pore zeolite

An international research team, led in Spain by CSIC scientist Miguel A. Camblor, has discovered a stable aluminosilicate zeolite with a three dimensional system of interconnected extra-large pores, named ZEO-1.

Zeolites are crystalline porous materials with important industrial applications, including uses in catalytic processes. The pore apertures limit the access of molecules into and out of the inner confined space of zeolites, where reactions occur.

The research, published in Science, proved that ZEO-1 possesses these “extra-large” pores of around 10 Å (1 angstrom equals one ten billionth of a meter), but also smaller pores of around 7 Å, which is actually the size of traditional “large” pores.

Because of its porosity, strong acidity and high stability, ZEO-1 may find applications as a catalyst in fine chemistry for the production of pharmaceutical intermediates, in controlled substance release, for pollution abatement or as a support for the encapsulation of photo- or electroactive species (they react to light or an electric field).

“The crossings of its cages delimit super boxes, open spaces that can be considered nanoreactors to carry out chemical reactions in their confined space”, explains Miguel A. Camblor, researcher at the Instituto de Ciencia de Materiales de Madrid – CSIC.

To prove that this new zeolite may be useful in applications involving bigger molecules, researchers measured the adsorption to the inner surface of the zeolite of the dye Nile red – a big molecule. Moreover, they tested its performance in fluid catalytic cracking of heavy oil, a process the world still relies on to produce fuels. In both processes, the new zeolite performed better than the conventional large pore zeolite used nowadays.

This research is the result of an international collaboration between eight research centers in China, the USA, Sweden and Spain. The team was led by Fei-Jian Chen (Bengbu Medical College, China), Xiaobo Chen (China University of Petroleum), Jian Li (Stockholm University) and Miguel A. Camblor (Instituto de Ciencia de Materiales de Madrid, CSIC).

Structure determination with synchrotron light

The zeolite was discovered following a high-throughput screening methodology. The structure solution was challenging because the zeolite has a very complex structure, with a small crystal size (<200nm) but an exceedingly large cell volume.

“The combination of electron diffraction data with synchrotron powder X-ray diffraction data collected at the MSPD beamline of the ALBA Synchrotron and the Argonne National Laboratory (USA) made possible the accurate structure determination of ZEO-1″, says Camblor.

Read more on the ALBA website

Image: A perspective view of the extra-large pore of ZEO-1 along (100)

Crossing the border for understanding how life is assembled

Ana’s #LightSourceSelfie from the ALBA synchrotron in Spain

Ana Joaquina Pérez-Berná is a beamline scientist at the ALBA synchrotron near Barcelona in Spain.

As a biologist working on the soft X-ray cryo tomography beamline (MISTRAL), her role involves supporting the users with their experiments and also doing her own research. The beamline’s capabilities enable scientists to study down at the cellular level and the research covers a wide variety of diseases such as malaria, zika virus and SARS-CoV-2, along with treatments such as antivirals and chemotherapy. When describing her work, Ana says, “You are the first person who can enter the cell and see how it is inside, discover how the virus builds its bio-factories inside the cells, or discover how therapies work. Crossing that border for understanding how life is assembled, that is a privilege!”

Someday you will get to play with those electrons!

Razib Obaid is a project scientist at the Linac Coherent Light Source (LCLS) at SLAC in California. LCLS is one of 7 free electron lasers in the Lightsources.org collaboration. The facility takes X-ray snapshots of atoms and molecules at work, providing atomic resolution detail on ultrafast timescales to reveal fundamental processes in materials, technology and living things. Its snapshots can be strung together into “molecular movies” that show chemical reactions as they happen.

In Razib’s #LightSourceSelfie, he takes you into the Near Experimental Hall and describes the stunning equipment that is used to undertake the experiments, the science it enables and the possibilities for new science with the upgrade to LCLSII. Razib says, “The best thing about working at a light source is the ability as a user to tap into the enormous scientific resources and experience that exists among the staff and scientists. Not to mention the state of the art instrumentation that you have access to, to realise your science. To my younger self, I would say, keep studying quantum mechanics, someday you will get to play with those electrons.”

To learn more about LCLS, visit https://lcls.slac.stanford.edu/

Korean scientists test the brand-new MYSTIIC

Jongwoo and his team from Seoul are “friendly users”. This name is given to scientists who do their experiments on a pristine machine, before it goes into user operation. Back in Korea we called them to hear more about their special beamtime and what it means for their battery research.

Who are you and how did you discover BESSY II?

I am Jongwoo Lim, assistant professor at the department of chemistry at Seoul National University. My research group “Battery and Energy Research Lab” counts many talented young scientists. In 2018 a colleague from the Max Planck Society invited me to give a talk and, on this occasion, I visited BESSY II. Back in Seoul I wanted my team to discover this amazing science environment.

Getting beamtime at BESSY II, how does this work?

The competition for beamtime is very strong, many scientists want to come to BESSY II! We send in a proposal and were rejected several times. Finally, after 2 years we got the green light for some beamtime at MAXYMUS, the beamline of the Max Planck Institute for Intelligent Systems (more below). And on top of that, beamline scientist Markus asked us if we were interested to use and test MYSTIIC (Microscope for x-raY Scanning Transmission In-situ Imaging of Catalysts). This new microscope will go into operation in Spring 2022.

Read more on the HZB blog science site

Image: Jongwoo’s team from Korea at BESSY II

Differences between African, Caucasian and Asian Hair

Researchers of IQAC-CSIC, in collaboration with the ALBA Synchrotron, demonstrate that African hair has more lipids that are highly disordered. This distinction with Caucasian and Asian hair might be relevant to develop new ethnic hair-care products.

Cerdanyola del Vallès, 14th December 2021Researchers from the Institute for Advanced Chemistry of Catalonia (IQAC-CSIC) in collaboration with the ALBA Synchrotron have studied and compared the lipid distribution of African, Caucasian and Asian hair fibers. More specifically, the work has determined the presence, distribution, and function of lipids of each ethnicity. The differences observed can explain some of the barrier properties against external substances that each hair type presents. In particular, African hair was demonstrated to have more lipids that are highly disordered, which can explain its differentiation from Asian and Caucasian hair concerning moisturization and swelling (when water content inside the fiber increases).

Read more on the ALBA website

Image: Left: Cross-sections observed by optical microscopy for Caucasian hair selected to analyze by μ-FTIR, regions were manually determined. Right: Chemical map of second derivative obtained at 2850 cm−1 (CH2 symmetric stretching) of Caucasian virgin hair (a) and Caucasian delipidized hair (b).

Credit: ALBA

Mind the gap – ESRF tracks defects triggered by composites in root fillings

Polymer composite fillings of root-canal treated teeth can fail over time. Scientists led by the Charité University in Berlin (Germany) have found that this is not because of the dentist’s lack of skills but rather because of stresses that build up and deform the biomaterial just after it is placed. The results are published in Acta Biomaterialia.

It is one of the most peculiar images that can come to mind: a dentist restoring severely destroyed teeth and placing fillings on a beamline at a synchrotron. It is, however, exactly what happened on beamline ID19 a while back, when a team from the Charité and TU Universities in Berlin and the ESRF examined how well composite fillings adapt to cavities in the tooth root canal orifice.

To treat cavities in teeth, dentists expose solid tooth tissue prior to “filling” the volume of missing structure with rigid biomaterials that sustain chewing forces. In the past, dentists used metals such as amalgam or gold, but today they mostly use composite materials, made of polymer and glass. Such materials, which are well resistant to damage and highly aesthetic, allow rapid recovery of tooth function. However, composites tend to fail in the long run, especially in root-canal filled teeth.

Read more on the ESRF website

Image: Kerstin Bitter placing a filling on a tooth on ID19’s experimental hutch.

Credit: P. Zaslansky.

Great minds think alike!

Marion Flatken from BESSY II & Luisa Napolitano from Elettra give advice to those at the start of their careers

Our #LightSourceSelfies campaign features staff and users from 25 light sources across the world. We invited them all to answer a specific set of questions so we could share their insights and advice via this video campaign. Today’s montage features Marion Flatken from BESSY II, in Germany, and Luisa Napolitano from Elettra, in Italy. Both scientists offered the same advice to those starting out on their scientific journeys: “Be curious and stay curious”. Light source experiments can be very challenging and the tough days can lead to demotivation and self-doubts. In these times, it is good to seek out support from colleagues, all of whom will have experienced days like this. Even if you think you can’t succeed with your research goals, try because it is amazing what can be achieved through hard work, tenacity and collaboration.

Civil engineer plays key role in construction of Brazil’s light source

Sirius is the only light source in Latin America and is located at the Brazilian Center for Research in Energy and Materials. Mayara Adorno is a civil engineer and her role has been to oversee the technology control of the structures that house the synchrotron machine.

In her #LightSource Selfie, Mayara explains how she was attracted by the opportunity to work on a large project, taking it from paper plans through to completion. As with all large scale science facility construction projects, there were daily challenges for Mayara and her engineering colleagues. She says, “I’ve learned a lot from the project and this was very important for my professional and personal growth. I would advise any young engineer not to give up on your dreams and, this way, become a person who always wants to be open to learn and teach.” “It makes me really proud to know that Sirius has turned into the great science infrastructure from the efforts and dedications of many professionals from different areas, including myself.”

Mayara Adorno, Civil Engineer, at Sirius

Be curious and stay curious!

Luisa Napolitano is a staff scientist working in the structural biology lab at the Elettra Sincrotrone in Trieste, Italy.

In her #LightSourceSelfie, Luisa talks about switching from cellular biology to structural biology and how proud moments come when you solve a structure that you have been working on for years.

Her fantastic lab tour explains how the equipment enables you to prepare proteins for a range of experimental techniques, including crystallography, electron microscopy, SAXS and NMR. Luisa also explains why it is so valuable to have a structural biology lab located at the synchrotron where beamline staff are on hand to give you advice about your research.

Finally Luisa touches on the way her work as a scientist is helping to inspire her 9 year old son. She offers this advice to younger peers, “Be curious and stay curious! Don’t be afraid and try, even if you think something is too much for you. Try it because you never know. It was like me when I started in structural biology at the beginning, I was scared but at the end of the story I like structural biology a lot, and I don’t think I will change my field of action anymore.”

Using strain to control echoes in ultrafast optics

Researchers at MAX IV measured echoes produced by silicon crystals using the coherent X-ray based technique, tele-ptychography, at NanoMAX imaging beamline. Their findings reveal that strain can be used to tune the time delay of echoes, an important step for tailoring ultrafast X-ray optics.

“The use of coherent X-rays to visualize echoes is new. This is the first time it has been used for this purpose, however, the technique itself is not new,” said Dina Carbone, MAX IV Beamline Scientist and project leader.

Echoes are parallel, monochromatic X-ray beams which appear, with time delay, from the diffraction of perfect crystals, which are often used in ultrafast optics systems. Dynamical diffraction effects produce echoes.

Echoes are difficult to observe because of their proximity to each other—only a few microns apart—and appear even closer in the presence of strain, explained Carbone. “We knew it would become possible to see them using this new special approach. It would also be quite a challenge because we had to build an ad-hoc setup at NanoMAX. The experience of the group from PSI [Paul Scherrer Institute] was quite crucial.”

Read more on the MAX IV website

Image: Experimental setup for tele-ptychography at NanoMAX beamline. 

Credit:  Angel Rodriguez-Fernandez

Lightsource research on SARS-CoV-2

Coronaviruses are a family which includes the common cold, SARS, MERS and the current outbreak of the disease COVID-19, caused by the SARS-CoV-2 virus.
Several facilities of our collaboration have started research about SARS-CoV-2 virus or launched open calls for rapid access. This post will be updated regularly.

Publications on SARS-CoV-2 Rapid Access




Publications

Published articles

2021.12.09 Diamond Light Source (UK) article on their website: Trigger of rare blood clots with AstraZeneca and other COVID vaccines found by scientists

2021.11.06 APS at Argonne National Laboratory (USA) article on their website: Advanced Photon Source Helps Pfizer Create COVID-19 Antiviral Treatment

2021.11.04 ESRF (France) article on their website: EBS X-rays show lung vessels altered by COVID-19 (esrf.fr)

2021.08.11 BESSY II at HZB (Germany) article on their website: HZB coordinates European collaboration to develop active agents against Corona – Helmholtz-Zentrum Berlin (HZB) (helmholtz-berlin.de)

2021.08.10 Canadian Light Source article on their website: Developing antiviral drugs to treat COVID-19 infections

2021.07.06 European XFEL (Germany) article on their website: XFEL: Insights into coronavirus proteins using small angle X-ray scattering

2021.06.21 Diamond Light Source (UK) article on their website: X-ray fluorescence imaging at Diamond helps find a way to improve accuracy of Lateral Flow Tests

2021.06.17 Australian Synchrotron (ANSTO) article on their website: Research finds possible key to long term COVID-19 symptoms

2021.05.11 Swiss Light Source at PSI (Switzerland) article on their website: How remdesivir works against the coronavirus

2021.05.28 SLAC (CA / USA) article from the Stanford Synchrotron Radiation Lightsource (SSRL): Structure-guided Nanobodies Block SARS-CoV-2 Infection | Stanford Synchrotron Radiation Lightsource

2021.05.21 ALS (USA) article on their website: Guiding Target Selection for COVID-19 Antibody Therapeutics

2021.05.21 ESRF (France) article on their website: Combatting COVID-19 with crystallography and cryo-EM (esrf.fr)

2021.05.18 ALS (USA) article on their website: How X-Rays Could Make Reliable, Rapid COVID-19 Tests a Reality | Berkeley Lab (lbl.gov)

2021.04.27 Canadian Light Source (Canada), video on their website Investigating the long-term health impacts of COVID-19 (lightsource.ca)

2021.04.22 Synchrotron Light Research Institute (Thailand), article on their website: SLRI Presented Innovations Against COVID-19 Outbreak to MHESI Minister on His Visit to a Field Hospital at SUT

2021.04.16 Diamond Light Source (UK) article on their website: Massive fragment screen points way to new SARS-CoV-2 inhibitors

2021.04.14 SLAC (CA / USA), article also with news about research at Stanford Synchrotron Radiation Lightsource (SSRL):Researchers search for clues to COVID-19 treatment with help from synchrotron X-rays

2021.04.07 Diamond Light Source (UK), article on their website: First images of cells exposed to COVID-19 vaccine – – Diamond Light Source

2021.04.05 ALS (CA/USA) blog post on Berkeley Lab Biosciences website: New COVID-19 Antibody Supersite Discovered

2021.04.02 PETRA III at DESY (Germany), article and animation on their website DESY X-ray lightsource identifies promising candidate for COVID drugs

2021.03.26 Diamond Light Source (UK), article on their website: New targets for antibodies in the fight against SARS-CoV-2

2021.02.23 Australian Light Source (ANSTO) Australia, article on their website: Progress on understanding what makes COVID-19 more infectious than SARS

2020.12.02 ESRF (France), article and video on their website: ESRF and UCL scientists awarded Chan Zuckerberg Initiative grant for human organ imaging project

2020.11.10 Diamond Light Source (UK), article and video on their website: From nought to sixty in six months… the unmasking of the virus behind COVID-19

2020.10.29 Canadian Light Source (Canada) video on their website: Studying how to damage the COVID-19 virus

2020.10.07 National Synchrotron Light Source II (NSLS-II) at Brookhaven Lab (NY / USA) article on their website: Steady Progress in the Battle Against COVID-19

2020.10.07 Diamond Light Source (UK), article on their website: Structural Biology identifies new information to accelerate structure-based drug design against COVID-19

2020.10.06 MAX IV (Sweden), article on their website: Tackling SARS CoV-2 viral genome replication machinery using X-rays

2020.08.31 SLAC (CA / USA), article also with news about research at Stanford Synchrotron Radiation Lightsource (SSRL): SARS-CoV-2 Spike Protein Targeted for Vaccine

2020.08.27 Diamond Light Source (UK), article on their website: Structural Biology reveals new target to neutralise COVID-19

2020.08.27 Canadian Light Source (Canada) video on their website: Developing more effective drugs

2020.08.25 Australian Synchrotron (ANSTO) (Australia) article on their website: More progress on understanding COVID-19

2020.08.24 DESY (Germany) article on their website: PETRA III provides new insights into COVID-19 lung tissue

2020.08.11 Australian Synchrotron (ANSTO) (Australia) article on their website: Unique immune system of the alpaca being used in COVID-19 research

2020.07.30 Swiss Light Source at PSI (Switzerland) article on their website: COVID-19 research: Anti-viral strategy with double effect

2020.07.29 National Synchrotron Light Source II (NSLS-II) at Brookhaven Lab (NY / USA) article on their website: Ready to join the fight against COVID-19.

2020.07.20 ALBA (Spain) article on their website: A research team from Centro de Investigaciones Biológicas Margarita Salas (CIB-CSIC) uses synchrotron light to study the possible effect of an antitumoral drug of clinical use over the viral cycle of SARS-CoV-2 coronavirus. 

2020.07.15 ALS (USA) article on their website: Antibody from SARS Survivor Neutralizes SARS-CoV-2

2020.07.14 Diamond Light Source (UK), article on their website: Engineered llama antibodies neutralise Covid-19 virus

2020.06.17 European XFEL (Germany) article on their website: Pulling Together: A collaborative research approach to study COVID-19

2020.06.15 European XFEL (Germany) article on their website: Open Science COVID19 analysis platform online

2020.06.09 APS at Argonne National Laboratory (USA) article on their website: Novel Coronavirus Research at the Advanced Photon Source

2020.05. Società Italiana di Fisica publishes an article about research done at Elettra Sincrotrone Trieste (Italy) and the Advanced Light Source (CA / USA): Accelerator facilities support COVID-19-related research

2020.05.27 Diamond Light Source (UK), new animation video demonstrating the work that has been done at Diamond’s XChem facilities.

2020.05.19 Advanced Light Source (CA / USA), article about their latest results: X-ray Experiments Zero in on COVID-19 Antibodies

2020.05.15 Swiss Light Source (Switzerland), article about their first MX results: First MX results of the priority COVID-19 call

2020.05.14 MAX VI (Sweden), article about their research: Tackling SARS CoV-2 viral genome replication machinery using X-rays

2020.05.14 CHESS (NY/USA), article: CHESS to restart in June for COVID-19 research

2020.05.14 the LEAPS initiative brings together many of our European members. The initative published this brochure: Research at LEAPS facilities fighting COVID-19

2020.05.12 Diamond Light Source (UK), article about their collaboration in a consortium: UK consortium launches COVID-19 Protein Portal to provide essential reagents for SARS-CoV-2 research

2020.05.11 Advanced Photon Source (IL/USA), article: Studying Elements from the SARS-CoV-2 Virus at the Bio-CAT Beamline

2020.05.07 European XFEL (Germany), article: European XFEL open for COVID-19 related research

2020.05.06 ESRF (France), article: World X-ray science facilities are contributing to overcoming COVID-19

2020.04.29. BESSY II at HZB (Germany), article: Corona research: Consortium of Berlin research and industry seeks active ingredients

2020.04.29. Swiss Light Source and SwissFEL at PSI (Switzerland), interview series on the PSI website: Research on Covid-19

2020.04.23. PETRA III at DESY (Germany), article: X-ray screening identifies potential candidates for corona drugs

2020.04.21. MAX IV (Sweden), article: BioMAX switches to remote operations in times of COVID-19

2020.04.16. SLAC (CA / USA), article also with news about research at Stanford Synchrotron Radiation Lightsource (SSRL): SLAC joins the global fight against COVID-19

2020.04.15 Berkeley National Lab (CA/ USA), article with a focus on the research at the Advanced Light Source (ALS):
Staff at Berkeley Lab’s X-Ray Facility Mobilize to Support COVID-19-Related Research

2020.04.07 Diamond Light Source (UK), article: Call for Chemists to contribute to the fight against COVID-19
Crowdfunding: COVID-19 Moonshot

2020.04.07. ANSTO’s Australian Synchrotron (Victoria), article: Aiding the global research effort on COVID-19

2020.04.06. National Synchrotron Light Source II (NSLS-II) at Brookhaven Lab (NY / USA), article: Brookhaven Lab Mobilizes Resources in Fight Against COVID-19

2020.04.02. BESSY II at HZB (Germany), article: Corona research: Two days of measuring operation to find the right key

2020.03.31 Diamond Light Source (UK), article: Jointly with Exscientia and Scripps Research, Diamond aims to accelerate the search for drugs to treat COVID-19

2020.03.27 Argonne National Laboratory with the Advanced Photon Source (APS) and other facilities on-site (IL / USA), article: Argonne’s researchers and facilities playing a key role in the fight against COVID-19

2020.03.27 ANSTO’s Australian Synchrotron (Victoria), article and video: Helping in the fight against COVID-19

2020.03.25 PETRA III at DESY (Germany), article: Research team will X-ray coronavirus proteins

2020.03.23 Diamond Light Source (UK) releases its first animation explaining: SARS-CoV-2 Mpro Single Crystal Crystallography

2020.03.25 CERN Courrier (Switzerland) article about synchrotron research on SARS-CoV-2, written by Tessa Charles (accelerator physicist at the University of Melbourne currently based at CERN, completed her PhD at the Australian Synchrotron): Synchrotrons on the coronavirus frontline

2020.03.19 BESSY II at Helmholtz-Zentrum Berlin (Germany), research publication: Coronavirus SARS-CoV2: BESSY II data accelerate drug development

2020.03.19 BESSY II at Helmholtz-Zentrum Berlin (Germany), technique explanation webpage: Protein crystallography at BESSY II: A mighty tool for the search of anti-viral agents

2020.03.16 Diamond Light Source (UK), article on their “Coronavirus Science” website: Main protease structure and XChem fragment screen

2020.03.12. Elettra Sincrotrone (Italy), article on their website: New project to fight the spread of Coronavirus has been approved

2020.03.05. Advanced Photon Source (IL / USA), article on their website: APS Coronavirus Research in the Media Spotlight

2020.03.05. Advanced Photon Source (IL / USA), research publication: “Crystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2,” bioRXiv preprint  DOI: 10.1101/2020.03.02.968388, Article on their website (source: Northwestern University): New Coronavirus Protein Reveals Drug Target

Facility Covid-19 research pages

The Canadian Light Source (Canada) has created a specific page highlighting their COVID-19 research: COVID-19 research at the Canadian Light Source

BESSY II at HZB (Germany) has set up a page where it shows their contributions to the research on SARS-CoV-2 , see here

DESY (Germany) has launched a new page dedicated to Corona Research: https://www.desy.de/news/corona_research/index_eng.html

Diamond Light Source (UK) has created a specific website “Coronavirus Science” with platforms for various audiences: scientific community, general public and the media: https://www.diamond.ac.uk/covid-19.html

ELETTRA (Italy) has launched a new page dedicated to COVID-19 research: https://www.elettra.eu/science/covid-19-research-at-elettra.html

The Photon Division of PSI (Switzerland) have collated many information linked to their institute on coronavirus-relevant research (recent publications, rapid access…): https://www.psi.ch/en/psd/covid-19

ALBA (Spain) has set up a dedicated area on their website for information related to COVID-19 (rapid access, publications etc): https://www.albasynchrotron.es/en/covid-19-information/

The ALS (CA/USA) has created a page listing all COVID-19 related research: https://als.lbl.gov/tag/covid-19/




Rapid access

Scientists can apply for rapid access at following facilities (only member facilities of Lightsources.org are referenced, the most recent published (or updated) call is mentioned first).

  • The National Synchrotron Light Source II (NSLS-II) in NY / USA is offering a streamlined and expedited rapid access proposal process for groups that require beam time for structural biology projects directly related to COVID-19. The Center for Biomolecular Structure team is supporting remote macromolecular crystallography experiments at Beamlines 17-ID-1 (AMX) and 17-ID-2 (FMX) in this research area. To submit a macromolecular crystallography proposal for COVID-19 related research, use the following form:
    https://surveys.external.bnl.gov/n/RapidAccessProposal.aspx
  • The Advanced Photon Source (APS) at Argonne National Laboratory in IL / USA  user program is operational to support:

·         Research on SARS-CoV-2 or other COVID-19-related research that addresses the current pandemic.

·         Critical, proprietary pharmaceutical research.

·         Mail-in/remote access work for any research involving low-risk samples and most medium-risk samples (as defined on the APS ESAF form).

·         Limited in situ research (set-up with one person, and ability to carry out majority of experiment safely remotely)
https://www.aps.anl.gov/Users-Information/About-Proposals/Apply-for-Time

PETRA III at DESY in Germany offers also Fast Track Access for Corona-related research:
https://photon-science.desy.de/users_area/fast_track_access_for_covid_19/index_eng.html

Australian Synchrotron at ANSTO makes its macromolecular crystallography beamlines available to structural biologists in response to the COVID-19 pandemic: https://www.ansto.gov.au/user-access

North American DOE lightsource facilities have created a platform to enable COVID-19 research. There you can find ressources and points of contact to request priority access:
Structural Biology Resources at DOE Light Sources

Elettra Sincrotrone Trieste in Italy opens to remote acces following beamlines: XRD1, XRD2, SISSI-BIO and MCX thanks to an CERIC-ERIC initiative:
https://www.ceric-eric.eu/2020/03/10/covid-19-fast-track-access/
http://www.elettra.eu/userarea/user-area.html

The Advanced Light Source (ALS) at LBNL in California / USA has capabilities relevant to COVID-19 and researchers can apply through their RAPIDD mechanism:
https://als.lbl.gov/apply-for-beamtime/

ALBA Synchrotron in Spain offers a COVID-19 RAPID ACCESS on all beamlines:
https://www.albasynchrotron.es/en/en/users/call-information

SOLARIS Synchrotron in Poland gives acces to its Cryo Electron Microscope thanks to an CERIC-ERIC initiative: https://www.ceric-eric.eu/2020/03/10/covid-19-fast-track-access/

Swiss Light Source and Swiss FEL at PSI in Switzerland offer priority access to combating COVID-19:
https://www.psi.ch/en/sls/scientific-highlights/priority-access-call-for-work-on-combating-covid-19

Diamond Light Source in the United Kingdom opened also a call for rapid access:
https://www.diamond.ac.uk/Users.html

Image: Electron density at the active site of the SARS-CoV-2 protease, revealing a fragment bound
Credit: Diamond Light Source

A recipe for successful science

Synchrotrons and free electron lasers (FELs) look stunning. The experimental equipment is state-of-the-art, which makes being a light source user both exhilarating and nerve racking. A key ingredient for success is excellent support from the beamline staff on the experimental station you are using. As Kuda Jakata, a postdoc who supports users at the ESRF in Grenoble, France, says in this #LightSourceSelfie, “The light sources community, they are very helpful people and they actually want to push boundaries and so they work hard and they do a lot of really interesting science.”

#LightSourceSelfies Monday Montage!

That 1st light source experiment: The best way to understand is to experience!

Sae Hwan Chun, beamline scientist and condensed matter physicist at the PAL XFEL

Sae Hwan Chun is a beamline scientist and condensed matter physicist at the PAL XFEL is South Korea, one of the seven XFEL facilities in the Lightsources.org collaboration. Sae Hwan is able to research ultra-fast and dynamic phenomena in condensed matter by using the femtosecond X-ray pulses that XFELs generate.

In his #LightSourceSelfie, recalling his first synchrotron experiment at the Advanced Photon Source (APS), Sae Hwan said, “I thought that I understood how to do the experiment, but actually doing it was a completely different matter. It was like even though you pass a written exam for a driving license your mind goes blind to when you actually drive a car for the first time. This first day gave me a lesson that you should experience something if you want to understand it.”

Trigger of rare blood clots with AstraZeneca and other COVID vaccines found by scientists

understanding rare blood clots caused by some  COVID vaccines – important first to prevention

A collaborative team from the School of Medicine at the University of Cardiff, Wales and a range of US institutions used the UK’s national synchrotron, Diamond Light Source, to help reveal the details of how a protein in the blood is attracted to a key component of Adenovirus based vaccines.  

It is believed this protein kicks off a chain reaction, involving the immune system, that can culminate in extremely rare but dangerous blood clots. The Cardiff team were given emergency government funding to find the answers. In collaboration with scientists in the US and from AstraZeneca, they set out to collect data on the structure of the vaccines and perform computer simulations and related experiments to try and uncover why some of the vaccines based on Adenoviruses were causing blood clots in rare cases.  

Moderna and BioNTech are based on mRNA, whereas AstraZeneca and Johnson & Johnson are based on Adenoviruses. Blood clots have only been associated with vaccines that use Adenoviruses.

Read more on the Diamond website

Image: Crystallisation of ChAdOx1 fibre-knob protein results in 4 copies of the expected trimer per asymmetric unit and reveals side-chain locations. The crystal structure was solved with 12 copies of the monomer in the asymmetric unit, packing to form 3 trimeric biological assemblies. Density was sufficient to provide a complete structure in all copies.

Credit: Image reused from DOI: 10.1126/sciadv.abl8213 under the CC BY 2.0 license.